CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035652_P001	Maize	cytosol	79.61	83.08
Os05t0112101-01	Rice	plasma membrane	60.83	65.23
TraesCS1B01G044800.1	Wheat	cytosol	64.53	65.05
TraesCS1D01G036500.1	Wheat	cytosol	64.37	64.89
TraesCS1A01G035100.1	Wheat	cytosol	64.04	64.77
HORVU1Hr1G005290.1	Barley	cytosol	62.92	63.43
CDY35361	Canola	cytosol	47.99	50.59
CDX76976	Canola	cytosol	47.99	50.42
CDY11530	Canola	cytosol	46.55	50.0
EER92480	Sorghum	cytosol, mitochondrion, plastid	51.36	49.61
CDX68831	Canola	cytosol	46.71	49.24
CDX75232	Canola	cytosol	46.39	48.74
VIT_11s0016g05480.t01	Wine grape	cytosol	48.96	48.18
KRH20132	Soybean	cytosol	47.19	48.04
GSMUA_Achr11P...	Banana	cytosol	34.83	47.59
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	47.03	47.56
Solyc08g059660.1.1	Tomato	cytosol	48.31	47.33
Bra007800.1-P	Field mustard	cytosol	46.55	47.31
PGSC0003DMT400035762	Potato	cytosol	48.48	47.26
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	39.97	47.25
Solyc07g008060.1.1	Tomato	cytosol	46.55	47.23
PGSC0003DMT400040963	Potato	cytosol	48.48	47.11
KRH52429	Soybean	endoplasmic reticulum	48.15	46.8
Bra011333.1-P	Field mustard	cytosol	47.03	46.73
KRH61760	Soybean	mitochondrion	48.8	46.63
Bra034252.1-P	Field mustard	cytosol	48.48	46.53
AT4G32285.2	Thale cress	cytosol	46.87	45.98
Solyc06g011450.1.1	Tomato	cytosol	45.26	45.93
CDX76977	Canola	cytosol	38.36	45.79
AT2G25430.1	Thale cress	cytosol	47.83	45.64
CDX76760	Canola	cytosol	34.19	45.61
VIT_04s0008g05540.t01	Wine grape	cytosol	48.15	45.25
KRH05593	Soybean	cytosol	5.3	38.37
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	38.52	37.97
EES18258	Sorghum	cytosol	35.47	35.47
KXG33814	Sorghum	cytosol, mitochondrion	30.18	33.04
KXG20765	Sorghum	mitochondrion	26.97	29.58
EES19899	Sorghum	cytosol, mitochondrion, plastid	26.48	29.26
KXG20534	Sorghum	cytosol, mitochondrion	26.16	28.1
EES06356	Sorghum	cytosol	25.04	27.37
KXG19435	Sorghum	cytosol, mitochondrion	24.72	27.3
EES01312	Sorghum	cytosol	24.56	27.18
KXG31293	Sorghum	cytosol	22.95	26.0
EES13983	Sorghum	mitochondrion	15.73	24.38
EER96828	Sorghum	mitochondrion	14.93	23.13
EES08262	Sorghum	mitochondrion, plastid	12.84	18.31

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	EntrezGene:8067331	InterPro:ANTH_dom	UniProt:C5YYJ9
InterPro:Clathrin_AP_dom2	EnsemblPlants:EES18894	ProteinID:EES18894	ProteinID:EES18894.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF23	SMART:SM00273
EnsemblPlantsGene:SORBI_3009G014200	SUPFAM:SSF48464	SUPFAM:SSF89009	unigene:Sbi.5449	UniParc:UPI0001A88A13	RefSeq:XP_002440464.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1229154..1231989

Molecular Weight (calculated)

65765.9 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.145

Length

623 amino acids

Sequence
(BLAST)

001: MSIRKALGAV KDQATIGIAR VTGAVAPDLD VAIVRATSHE DAPPDERHAR EVLRLASATG AAPACVASIA RRLSKTRDYV VAAKCLALLH RLATSTASDH
101: ADPTEGGTEG GVGTPSFLHE LLRPTLTGRR AGEPVLALLL DFRDDAHAAS WDHSTFVRAY STYLLDRVRF LVLLLPAPRF AAADDSRVAG PGPLPPQAST
201: ADMDTDALLG RARHLRHLLD RVLACRPAGG AGTSRVVRAV LHPLLRDSFR VYEDVALVLA LLLDRFFDMD YPDCVKAFET YVGTAKQIDA LRGFYAWCDD
301: AGVARSSDFP DVRRVDDKLL ETMEQFLRER GRAGRASVSP PRPRSARDSA VNARGDDVDH VDDMNGIKAL PAPPTRSSGG ERARPVVLPT KEAADQSVLV
401: DLREPAATAD EQGNKLALAL FSAPPATDGD NWVTFASDAA PEPAVTSAWQ TPAAEPGKAD WELALVDTAS NLSKQAASLG GGMDTLLLGG MYEQGAVRQQ
501: VAAQAASGSA SSVLPGHGAA APVLMLPAPD GTVQTVGGDP FAASLAVPPP SYVQMAEMER KQQLLVQEQQ MWAQYRQGGM QGQPAGFNGL AGGGVVPSNA
601: GMAVPYGGYG GMPMAYNQVG GYY

Best Arabidopsis Sequence Match ( AT4G32285.2 )
(BLAST)

001: MALSMRKAIG VVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDQSSDKY IREILSLTSL SRGYVHACVT SVSRRLKKTR DWIVALKALM LVHRLLNEGD
101: PLFQEEILYA TRRGTRILNM SDFRDEAHSS SWDHSAFVRT YASYLDQRLE LALFERRGRN GGGSSSSHQS NGDDGYNRSR DDFRSPPPRT YDYETGNGFG
201: MPKRSRSFGD VNEIGAREEK KSVTPLREMT PERIFGKMGH LQRLLDRFLS CRPTGLAKNS RMILIAMYPV VKESFRLYAD ICEVLAVLLD KFFDMEYTDC
301: VKAFDAYASA AKQIDELIAF YHWCKDTGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRA KSPERKEIEA PPAPAPPVEE PVDMNEIKAL PPPENHTPPP
401: PPAPEPKPQQ PQVTDDLVNL REDDVSGDDQ GNKFALALFA GPPANNGKWE AFSSDNNVTS AWQNPAAELG KADWELALVE TASNLEHQKA AMGGGLDPLL
501: LNGMYDQGAV RQHVSTSELT GGSSSSVALP LPGKVNSHIL ALPAPDGTVQ KVNQDPFAAS LTIPPPSYVQ MAEMDKKQYL LTQEQQLWQQ YQQEGMRGQA
601: SLAKMNTAQT AMPYGMPPVN GMGPSPMGYY YNNPY

Arabidopsis Description

Probable clathrin assembly protein At4g32285 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9J8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.