CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G322300.1	Wheat	mitochondrion	68.84	69.2
TraesCS7A01G421900.1	Wheat	mitochondrion	69.19	68.95
Os06t0699800-00	Rice	cytosol	52.99	68.56
TraesCS7D01G414100.1	Wheat	mitochondrion	68.49	68.49
CDY42239	Canola	cytosol	38.56	64.99
HORVU7Hr1G097510.7	Barley	mitochondrion	58.1	64.58
Solyc12g017440.1.1	Tomato	cytosol	33.45	63.55
GSMUA_Achr3P05590_001	Banana	cytosol	57.04	59.34
EES19899	Sorghum	cytosol, mitochondrion, plastid	55.81	56.21
KRH02791	Soybean	cytosol	56.69	56.1
VIT_11s0103g00620.t01	Wine grape	cytosol	58.1	55.84
KRH19094	Soybean	cytosol	56.34	55.75
KRH12315	Soybean	cytosol	57.57	54.87
KRH37330	Soybean	cytosol	57.22	54.53
EES06356	Sorghum	cytosol	54.58	54.39
Solyc02g043810.2.1	Tomato	cytosol	55.11	54.15
PGSC0003DMT400036570	Potato	cytosol	54.58	54.1
CDY52732	Canola	cytosol	55.63	54.02
CDY38276	Canola	cytosol	55.99	53.72
CDY47927	Canola	cytosol	47.71	53.66
Bra002750.1-P	Field mustard	cytosol	55.81	53.46
AT5G57200.1	Thale cress	cytosol	55.46	53.3
EES01312	Sorghum	cytosol	52.82	53.29
KXG20534	Sorghum	cytosol, mitochondrion	53.7	52.59
AT4G25940.1	Thale cress	cytosol	55.63	52.58
Bra020460.1-P	Field mustard	cytosol	54.93	52.53
CDX94400	Canola	cytosol	54.75	52.18
CDX89382	Canola	cytosol	55.11	52.08
Bra013934.1-P	Field mustard	cytosol	55.11	52.08
KXG19435	Sorghum	cytosol, mitochondrion	47.89	48.23
KXG31293	Sorghum	cytosol	43.66	45.09
Solyc12g017430.1.1	Tomato	nucleus	15.85	42.45
PGSC0003DMT400025029	Potato	nucleus	19.37	38.73
EES18894	Sorghum	cytosol	29.58	26.97
EER92480	Sorghum	cytosol, mitochondrion, plastid	30.46	26.82
EES18258	Sorghum	cytosol	29.23	26.65
KXG33814	Sorghum	cytosol, mitochondrion	24.12	24.08
EES13983	Sorghum	mitochondrion	15.32	21.64
EER96828	Sorghum	mitochondrion	14.26	20.15
EES08262	Sorghum	mitochondrion, plastid	13.56	17.62

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	UniProt:A0A194YLB6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	EnsemblPlants:KXG20765	ProteinID:KXG20765	ProteinID:KXG20765.1
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF20	SMART:SM00273	EnsemblPlantsGene:SORBI_3010G250300
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0007F21B06	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:58944614..58948185

Molecular Weight (calculated)

62416.7 Da

IEP (calculated)

4.877

GRAVY (calculated)

-0.288

Length

568 amino acids

Sequence
(BLAST)

001: MGTVSVRKRW RKACGAIKDS ATVGIAKVNS GGGGRERKDL DVAVVKATTH VERPPKERHV AAIFAATSAS RPLTDVSYCV HALARRLSKT HNWVVALKTL
101: IVVHRTLREG DAAFREELLG YRRHGHALRM SNFKDDSSPL AWDCSAWVRT YALYLEERLE CFRVLRYDIE SERLRPAEGD PKGQSRTRTL GQDDLLEQLP
201: ALQQLLFRLV GCQPEGAAFG NYLIQYALAL VLKESFKIYC ALNDGIINLV DLFFDMTKLD AVKALDIYRR TGNLAKSLSD FYELCRSLEL ARHFQFPILR
301: EPPPSFLGTM EEYVREAPRT APLPNETIEY QQLDFVIRYQ EEQTPELKFQ AFEEPVAEEA PPEHEEPAQF ADDDSDDEPE TLTTADLLGL NEVNPAAAAL
401: EESNALALAI VPPGGSNNTS AIGFGEITGS SGWELALVTA QTSSSSSSSQ LAESKLAGGF DRLLLDSLYE DAARRQQATI DAAAYGNGHA FDRQNDPFAM
501: SNGVAPPTGV QMSMMAQQQQ VMFGMPQQFE PQYGAAASQL NPFGDAYSVA LASQGQGGTL HASVGSLI

Best Arabidopsis Sequence Match ( AT4G25940.1 )
(BLAST)

001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L

Arabidopsis Description

Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.