Factsheet for GSMUA_Achr3P05590_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42239	Canola	cytosol	42.86	69.44
Solyc12g017440.1.1	Tomato	cytosol	36.81	67.22
GSMUA_Achr7P04960_001	Banana	cytosol	64.29	63.82
GSMUA_Achr1P15690_001	Banana	cytosol	64.1	62.61
GSMUA_Achr4P20660_001	Banana	cytosol	63.19	61.94
GSMUA_Achr4P13420_001	Banana	cytosol	58.42	59.74
GSMUA_Achr9P21890_001	Banana	cytosol	59.52	58.04
VIT_11s0103g00620.t01	Wine grape	cytosol	62.45	57.7
KXG20765	Sorghum	mitochondrion	59.34	57.04
CDY47927	Canola	cytosol	52.38	56.63
AT5G57200.1	Thale cress	cytosol	60.81	56.18
PGSC0003DMT400036570	Potato	cytosol	58.79	56.02
KRH02791	Soybean	cytosol	58.79	55.92
CDY52732	Canola	cytosol	59.71	55.73
Solyc02g043810.2.1	Tomato	cytosol	58.97	55.71
CDY38276	Canola	cytosol	60.07	55.41
Bra002750.1-P	Field mustard	cytosol	59.89	55.14
TraesCS7D01G414100.1	Wheat	mitochondrion	57.33	55.11
KRH19094	Soybean	cytosol	57.88	55.05
TraesCS7B01G322300.1	Wheat	mitochondrion	56.96	55.04
Os06t0699800-00	Rice	cytosol	44.14	54.9
Bra020460.1-P	Field mustard	cytosol	59.71	54.88
TraesCS7A01G421900.1	Wheat	mitochondrion	57.14	54.74
CDX94400	Canola	cytosol	59.71	54.7
KRH12315	Soybean	cytosol	59.71	54.7
CDX89382	Canola	cytosol	60.07	54.58
Bra013934.1-P	Field mustard	cytosol	60.07	54.58
AT4G25940.1	Thale cress	cytosol	59.89	54.41
KRH37330	Soybean	cytosol	58.61	53.69
HORVU7Hr1G097510.7	Barley	mitochondrion	49.63	53.03
GSMUA_Achr6P03060_001	Banana	cytosol	49.45	49.36
GSMUA_Achr5P23570_001	Banana	cytosol	48.35	48.44
GSMUA_Achr4P05920_001	Banana	cytosol	47.25	47.08
Solyc12g017430.1.1	Tomato	nucleus	16.48	42.45
PGSC0003DMT400025029	Potato	nucleus	18.86	36.27
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	29.85	30.7
GSMUA_Achr10P...	Banana	mitochondrion	26.74	28.91
GSMUA_Achr11P...	Banana	cytosol	27.29	28.65
GSMUA_Achr11P...	Banana	cytosol	22.71	27.19
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	25.82	26.76
GSMUA_Achr7P02300_001	Banana	plastid	21.06	22.77
GSMUA_Achr2P18700_001	Banana	cytosol	20.7	22.55
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	25.46	21.99
GSMUA_Achr7P18620_001	Banana	mitochondrion	14.1	19.85
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.1	19.4
GSMUA_Achr7P02390_001	Banana	cytosol	14.47	18.99
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.44	17.22

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr3G05590_001
EnsemblPlants:GSMUA_Achr3P05590_001	EnsemblPlants:GSMUA_Achr3T05590_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0SC27
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000295E249	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At4g25940 [Source:GMGC_GENE;Acc:GSMUA_Achr3G05590_001]

Coordinates

chr3:-:3702352..3712746

Molecular Weight (calculated)

61105.4 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.301

Length

546 amino acids

Sequence
(BLAST)

001: MGTLESWRKA YGALKDTTTV SLAKVNSEFK DLDIAVVKAT NHVECPPKER HIRKIFVATS ANCPRSDVAY CVHALARRLS KTRNWVVALK SLIVIHRALR
101: EGDAPFRDEL LHYCHKANIL QISYFKDDSS SVAWDCSAWV RTYSLFLEER LECFRILRYD IEAEDLRRSS DDSSKNCSRT RTLGCQQLLE QLPALQQLLF
201: RLVECKPEGA AFGNYLIQYA LALVLKESFK TYCAINDGII NLVDLFFEMS RHEAIKALSI YKRAGQLAKN LSEFYEFCKA LELARNFQFP ILREPPPSFI
301: ATMEEYIREA PKIGSVNHDP NNQILSHTMI DLSLMLKQEY QERNSLAYKQ DETSSPESSE KPVVEDTEPS PVEFGLDEII PVAAELDEIN ALALAIPPGG
401: DSISTATGDL FSPGDSSGWE LALVTTSSNN NNQPTESKLA GGFDQLLLDS LYDDAARRLQ NTAVCHGGVA ANPYESMDPF AMSNYIAPPP NVQMALMTQQ
501: QQQQQQQQNM IVPQTYQPHF SHPQVASSNP FGDPFAAPLQ GSSSLI

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.