Factsheet for GSMUA_Achr6P18600_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	75.33	76.92
GSMUA_Achr10P...	Banana	mitochondrion	66.29	69.7
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	61.39	56.01
KRH10492	Soybean	cytosol, mitochondrion	62.52	55.7
KRH43936	Soybean	cytosol, mitochondrion	62.15	55.65
KRH58332	Soybean	mitochondrion	59.89	54.36
CDY15448	Canola	mitochondrion	58.38	54.2
AT1G03050.1	Thale cress	cytosol, mitochondrion	59.89	53.09
Bra030518.1-P	Field mustard	mitochondrion	58.38	52.54
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	57.06	52.15
CDY32494	Canola	mitochondrion	56.12	52.1
Bra032561.1-P	Field mustard	mitochondrion	58.19	51.76
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	56.5	51.55
CDY21904	Canola	mitochondrion	57.63	51.09
Bra036250.1-P	Field mustard	mitochondrion	57.63	50.92
CDY22070	Canola	mitochondrion	57.63	50.83
PGSC0003DMT400059062	Potato	cytosol	56.5	50.34
AT4G02650.1	Thale cress	mitochondrion	56.69	49.26
Solyc11g044860.1.1	Tomato	cytosol	45.01	47.8
CDY18145	Canola	cytosol	41.81	47.64
CDX89917	Canola	cytosol	42.0	47.55
Bra033369.1-P	Field mustard	cytosol	41.81	47.33
EES18258	Sorghum	cytosol	54.05	46.07
HORVU0Hr1G000720.3	Barley	cytosol	51.98	45.54
HORVU1Hr1G065590.1	Barley	cytosol	51.79	45.38
TraesCS1A01G266200.1	Wheat	cytosol	51.22	44.96
Os01t0881100-01	Rice	mitochondrion	43.88	44.72
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	44.26	44.59
TraesCS1B01G277200.1	Wheat	cytosol	50.66	44.46
Os05t0426100-00	Rice	cytosol	55.74	44.44
Zm00001d010228_P001	Maize	cytosol	51.22	44.23
GSMUA_Achr11P...	Banana	cytosol	36.35	42.32
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	42.94	41.08
KXG33814	Sorghum	cytosol, mitochondrion	43.88	40.95
TraesCS1D01G266400.1	Wheat	mitochondrion	51.04	40.94
CDY37444	Canola	nucleus	19.4	36.65
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	43.13	36.23
GSMUA_Achr7P04960_001	Banana	cytosol	34.09	32.91
GSMUA_Achr6P03060_001	Banana	cytosol	33.52	32.54
GSMUA_Achr4P20660_001	Banana	cytosol	33.52	31.96
GSMUA_Achr4P13420_001	Banana	cytosol	32.02	31.84
GSMUA_Achr1P15690_001	Banana	cytosol	33.33	31.66
GSMUA_Achr9P21890_001	Banana	cytosol	33.33	31.61
GSMUA_Achr5P23570_001	Banana	cytosol	32.2	31.38
GSMUA_Achr2P18700_001	Banana	cytosol	29.0	30.74
CDX86691	Canola	cytosol, mitochondrion	57.44	30.17
GSMUA_Achr3P05590_001	Banana	cytosol	30.7	29.85
GSMUA_Achr4P05920_001	Banana	cytosol	30.7	29.74
Zm00001d047867_P001	Maize	cytosol	18.27	29.48
GSMUA_Achr7P02300_001	Banana	plastid	26.37	27.72
GSMUA_Achr7P18620_001	Banana	mitochondrion	15.25	20.88
GSMUA_Achr7P02390_001	Banana	cytosol	16.2	20.67
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.69	19.65
GSMUA_Achr3P20230_001	Banana	mitochondrion	11.3	18.13

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	ncoils:Coil
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
EnsemblPlantsGene:GSMUA_Achr6G18600_001	EnsemblPlants:GSMUA_Achr6P18600_001	EnsemblPlants:GSMUA_Achr6T18600_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
UniProt:M0T858	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002965E95	SEG:seg	:	:

Description

Putative clathrin assembly protein At1g03050 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18600_001]

Coordinates

chr6:+:12831237..12833088

Molecular Weight (calculated)

60040.2 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.507

Length

531 amino acids

Sequence
(BLAST)

001: MAPSRLRMAL GAVKDQTSIG LAKVSNSTTM SELDVTIVKA TRHNEFPAEE KHVREILSLT CYSRAYIGAC VSLLSRRLGK TRSWAVALKT LILIHRLLSE
101: GDPAYEQEIF FATRRGTRML NMSDFRDTSR SDAWDFSAFV RTYALYLDER LDYRMHGRRK RRGSRSNIYK EEEEEKAAAA STSKATPVRE MKTERIFTRT
201: QQLQQLLERF LACRPTGAAK HNRIVAVALY PLVKESFQIY LDLADIMSIF VDRFMELQVP DCIRVHDIFS RLSKQFDELE VFYGWSKSAG ICRSSEYPEV
301: ERITTKKLDI MDEFIRDKAA LTHTKRQRSL EADRDASDDA KPPEEEPEHN MNAQEEEEAE ADLLNLKEDA MTSEEHGDML ALALFDGNMA DAAPKWEAFT
401: NNDNSSDWET ALVQTSSNLS GQKASFGGGF DMMLLDGMYN QAQAAVGHGH LGSGSGTTSG GRDPFAASLM VPPPSYVQMS EMERKQHLLV EEQQLWKQYS
501: KDGMQGQLAL AKLQQQFPPA AYPTGAYARM F

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.