Factsheet for PGSC0003DMT400076552

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	95.53	95.7
PGSC0003DMT400059062	Potato	cytosol	70.45	68.79
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	61.68	61.68
KRH58332	Soybean	mitochondrion	61.68	61.37
KRH43936	Soybean	cytosol, mitochondrion	59.79	58.68
CDY15448	Canola	mitochondrion	57.39	58.39
CDY32494	Canola	mitochondrion	57.39	58.39
KRH10492	Soybean	cytosol, mitochondrion	59.62	58.22
Bra032561.1-P	Field mustard	mitochondrion	58.76	57.29
Bra030518.1-P	Field mustard	mitochondrion	57.9	57.12
AT1G03050.1	Thale cress	cytosol, mitochondrion	58.59	56.93
GSMUA_Achr10P...	Banana	mitochondrion	49.14	56.63
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	51.55	56.5
CDY21904	Canola	mitochondrion	56.7	55.09
CDY22070	Canola	mitochondrion	56.7	54.82
Bra036250.1-P	Field mustard	mitochondrion	56.53	54.74
AT4G02650.1	Thale cress	mitochondrion	57.39	54.66
GSMUA_Achr11P...	Banana	cytosol	48.28	54.04
CDX89917	Canola	cytosol	42.44	52.67
CDY18145	Canola	cytosol	42.1	52.58
Bra033369.1-P	Field mustard	cytosol	42.27	52.45
CDY37444	Canola	nucleus	23.88	49.47
EES18258	Sorghum	cytosol	49.83	46.55
HORVU1Hr1G065590.1	Barley	cytosol	47.77	45.87
Zm00001d010228_P001	Maize	cytosol	48.28	45.69
TraesCS1A01G266200.1	Wheat	cytosol	47.42	45.62
HORVU0Hr1G000720.3	Barley	cytosol	47.42	45.54
TraesCS1B01G277200.1	Wheat	cytosol	47.08	45.29
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	46.91	44.32
PGSC0003DMT400035762	Potato	cytosol	48.45	44.13
Os05t0426100-00	Rice	cytosol	50.17	43.84
PGSC0003DMT400040963	Potato	cytosol	47.25	42.9
Os01t0881100-01	Rice	mitochondrion	37.63	42.03
TraesCS1D01G266400.1	Wheat	mitochondrion	47.08	41.39
KXG33814	Sorghum	cytosol, mitochondrion	40.21	41.12
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.49	40.36
CDX86691	Canola	cytosol, mitochondrion	57.73	33.23
PGSC0003DMT400075923	Potato	cytosol	30.24	31.26
PGSC0003DMT400036570	Potato	cytosol	29.55	30.02
Zm00001d047867_P001	Maize	cytosol	14.78	26.14
PGSC0003DMT400036091	Potato	cytosol	30.76	24.66
PGSC0003DMT400025029	Potato	nucleus	12.03	24.65
PGSC0003DMT400020390	Potato	cytosol	24.91	24.41
PGSC0003DMT400017184	Potato	cytosol	18.04	24.36
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	17.53	23.18
PGSC0003DMT400001773	Potato	nucleus	29.73	22.97
PGSC0003DMT400075705	Potato	mitochondrion	14.78	21.94
PGSC0003DMT400058608	Potato	mitochondrion	14.95	21.75

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102591567	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1CWY8	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400029764
PGSC:PGSC0003DMG400029764	EnsemblPlants:PGSC0003DMT400076552	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002949230	RefSeq:XP_006351813.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029764]

Coordinates

chr1:+:81620101..81623827

Molecular Weight (calculated)

65281.3 Da

IEP (calculated)

5.473

GRAVY (calculated)

-0.503

Length

582 amino acids

Sequence
(BLAST)

001: MGPSKLRQAI GAVKDQTSIS LAKVGSSASL SDLEVAIVKA TRHDEYPPEE RHIREILSLT SYSRAYVGAC VNFLSRRLSK TKNWVVALKA LMLIHRLLCD
101: GDPSYEEEIF FATRRGTRLL NMSDFRDSRS NSWDCSAFVR SYALYLDEHL EFRMQNRRGK RSAFAYNDDD EEEVRHNARG IKATPLREMK NDRVFSRIHH
201: LMQLLERFLA CRPAGSAKNN RVVIAALYAL VKESFQLYYD LTEITTLLFD KFIELSIPDS VKVLEIFFRI NKQYEEIEQF YDWSKTVGVT RTTEYPDIDI
301: IPPKKLERMD DLIREKSFRE QSRKAMRNEP TAEHVQETKR QEPKTEPEED MNAIKALPAP EVLPEEKTEE EEKKTVKTQE EGDLLNLGED VPTSEEHGDQ
401: LALALFDGGQ ATTNPATSIS PWQAFNDSGD WETALVQSAS HLSNQKTSLP GGFDTLMLNG MYQQGAVSQA VACSGVVATG SASSVALGSA GRPAMLALPA
501: PPTANGGANT AAPGTDPFAA SLAIAPPAYV QMSEMEKKQR LLMEEQLMWQ EYQKNGMQGK VGFANAQPNP YPYNIGGYRQ TF

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.