Factsheet for PGSC0003DMT400040963

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g011450.1.1	Tomato	cytosol	92.51	96.58
PGSC0003DMT400035762	Potato	cytosol	85.65	85.92
KRH52429	Soybean	endoplasmic reticulum	77.38	77.38
CDX76976	Canola	cytosol	70.51	76.22
CDY35361	Canola	cytosol	70.2	76.14
KRH61760	Soybean	mitochondrion	75.97	74.69
CDX68831	Canola	cytosol	68.49	74.28
CDX75232	Canola	cytosol	68.64	74.2
VIT_04s0008g05540.t01	Wine grape	cytosol	76.13	73.6
CDY11530	Canola	cytosol	66.3	73.28
Bra011333.1-P	Field mustard	cytosol	70.83	72.41
AT2G25430.1	Thale cress	cytosol	73.17	71.82
AT4G32285.2	Thale cress	cytosol	70.83	71.5
Bra034252.1-P	Field mustard	cytosol	72.39	71.49
Bra007800.1-P	Field mustard	cytosol	67.86	70.96
CDX76977	Canola	cytosol	56.94	69.92
CDX76760	Canola	cytosol	50.39	69.16
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	59.44	68.04
Zm00001d030399_P001	Maize	cytosol	37.13	68.0
Zm00001d046121_P001	Maize	cytosol	37.29	65.84
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	62.71	65.26
KRH05593	Soybean	cytosol	8.74	65.12
Zm00001d047804_P001	Maize	plasma membrane	64.27	64.98
EER92480	Sorghum	cytosol, mitochondrion, plastid	65.21	64.81
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	53.2	64.71
Os03t0275500-01	Rice	plasma membrane	65.68	64.67
Zm00001d028620_P001	Maize	plasma membrane	64.43	64.63
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	64.27	64.58
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	63.81	64.11
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	63.96	63.47
GSMUA_Achr11P...	Banana	cytosol	42.59	59.87
Os05t0112101-01	Rice	plasma membrane	49.77	54.91
TraesCS1A01G035100.1	Wheat	cytosol	51.17	53.25
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	52.11	52.85
TraesCS1D01G036500.1	Wheat	cytosol	50.7	52.59
TraesCS1B01G044800.1	Wheat	cytosol	50.7	52.59
HORVU1Hr1G005290.1	Barley	cytosol	49.77	51.62
Zm00001d035652_P001	Maize	cytosol	45.4	48.74
EES18894	Sorghum	cytosol	47.11	48.48
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	42.9	47.25
PGSC0003DMT400059062	Potato	cytosol	42.9	46.14
PGSC0003DMT400075923	Potato	cytosol	28.39	32.33
PGSC0003DMT400036570	Potato	cytosol	27.46	30.72
PGSC0003DMT400017184	Potato	cytosol	20.12	29.93
PGSC0003DMT400025029	Potato	nucleus	13.1	29.58
PGSC0003DMT400036091	Potato	cytosol	31.36	27.69
PGSC0003DMT400020390	Potato	cytosol	24.65	26.6
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	17.94	26.14
PGSC0003DMT400075705	Potato	mitochondrion	15.91	26.02
PGSC0003DMT400001773	Potato	nucleus	29.17	24.83
PGSC0003DMT400058608	Potato	mitochondrion	15.44	24.75

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102586018	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1BAP5	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400015846
PGSC:PGSC0003DMG400015846	EnsemblPlants:PGSC0003DMT400040963	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002949B2E	RefSeq:XP_006362623.1	RefSeq:XP_006362624.1	SEG:seg

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015846]

Coordinates

chr6:-:18314558..18317105

Molecular Weight (calculated)

70915.1 Da

IEP (calculated)

4.997

GRAVY (calculated)

-0.479

Length

641 amino acids

Sequence
(BLAST)

001: MAPTTIRKAI GAVKDQTSIG IAKVASNMAP ELEVAIVKAT SHDDEPAGEK YIREILQLTS SSRGYVTACM SAISKRLGKT RDWIVALKCL MLIHRLLNDG
101: DAVFQQEIMY ATRRGTRLLN LLDFRDEAHA SSWDHSAFVR TYALYLDQRL ELMVFERKQN GGEMERYGSK DEQWRSPQSS NHGYDYDHGD FRDEPGYGMR
201: RSRSSGDVRE SIQEKKDVTP LREMKPERIF GKMTHLQRLL DRFLSCRPTG LAKNERMVLV ALYPVVKESY KIYMDICDVL AVLLDKFFDM EYEDCVKAFD
301: AYSSAAKQID ELVGFYNWCK DIGVSRSSEY PEVSRITSKL LDTLEEFVRD RAKVMKSPER KVESQPAPQE EEPIPDMNEI KALPPPEDYT APPPPEPEPP
401: KPKPVIQETR DLVDLREEGV TADDQGNKFA LALFAGPGTS NANGSWEAFP SNGEPEVTSA WQNPAAESGK ADWELALVET ASNLSKQKAA LGGGLDPLLL
501: NGMYDQGVVR QHVATAQSSG GSASSVALPG VGKSATPVLA LPAPDGTVQT VGQDPFAASL SVPPPSYVQM ADLQKKEQLL VQEQMVWQQY SRDGMQGQTS
601: LAKITTGGYY GPGQPPVMPY GMPPVNGVGI PPAAGYYYNP Y

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.