Factsheet for VIT_04s0008g05540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52429	Soybean	endoplasmic reticulum	78.28	80.97
KRH61760	Soybean	mitochondrion	78.58	79.91
CDX76976	Canola	cytosol	70.59	78.92
CDY35361	Canola	cytosol	70.29	78.85
PGSC0003DMT400035762	Potato	cytosol	73.91	76.68
Solyc08g059660.1.1	Tomato	cytosol	73.45	76.57
PGSC0003DMT400040963	Potato	cytosol	73.6	76.13
CDY11530	Canola	cytosol	66.52	76.03
CDX68831	Canola	cytosol	67.42	75.63
CDX75232	Canola	cytosol	67.42	75.38
AT2G25430.1	Thale cress	cytosol	74.21	75.34
Bra034252.1-P	Field mustard	cytosol	73.3	74.88
Solyc06g011450.1.1	Tomato	cytosol	69.08	74.59
Bra007800.1-P	Field mustard	cytosol	68.33	73.9
AT4G32285.2	Thale cress	cytosol	70.59	73.7
Bra011333.1-P	Field mustard	cytosol	69.68	73.68
VIT_11s0016g05480.t01	Wine grape	cytosol	69.68	72.99
CDX76977	Canola	cytosol	57.01	72.41
CDX76760	Canola	cytosol	49.92	70.88
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	59.43	70.36
Zm00001d030399_P001	Maize	cytosol	37.1	70.29
Zm00001d046121_P001	Maize	cytosol	37.71	68.87
KRH05593	Soybean	cytosol	8.75	67.44
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	53.54	67.36
Os03t0275500-01	Rice	plasma membrane	65.91	67.13
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	64.4	66.93
Zm00001d047804_P001	Maize	plasma membrane	63.95	66.88
EER92480	Sorghum	cytosol, mitochondrion, plastid	65.01	66.82
Zm00001d028620_P001	Maize	plasma membrane	64.25	66.67
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	63.95	66.46
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	64.4	66.1
GSMUA_Achr11P...	Banana	cytosol	42.38	61.62
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	53.24	55.85
Os05t0112101-01	Rice	plasma membrane	48.87	55.77
TraesCS1A01G035100.1	Wheat	cytosol	50.38	54.22
TraesCS1D01G036500.1	Wheat	cytosol	50.23	53.88
TraesCS1B01G044800.1	Wheat	cytosol	49.92	53.56
HORVU1Hr1G005290.1	Barley	cytosol	48.72	52.27
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	43.74	49.83
Zm00001d035652_P001	Maize	cytosol	43.74	48.58
EES18894	Sorghum	cytosol	45.25	48.15
VIT_11s0016g05900.t01	Wine grape	cytosol	25.94	33.86
VIT_12s0059g01330.t01	Wine grape	cytosol	29.56	33.16
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	26.85	31.39
VIT_11s0103g00620.t01	Wine grape	cytosol	27.9	31.3
VIT_11s0037g01000.t01	Wine grape	cytosol	23.53	30.59
VIT_18s0089g01330.t01	Wine grape	cytosol	17.04	28.11
VIT_01s0011g06370.t01	Wine grape	mitochondrion	14.63	25.19

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100261235	wikigene:100261235	MapMan:22.1.4.6	InterPro:ANTH_dom
ProteinID:CCB46809	ProteinID:CCB46809.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	UniProt:F6H331
EMBL:FN595231	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100261235	wikigene:LOC100261235	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF13	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002108FD9
ArrayExpress:VIT_04s0008g05540	EnsemblPlantsGene:VIT_04s0008g05540	EnsemblPlants:VIT_04s0008g05540.t01	unigene:Vvi.3101	RefSeq:XP_002285168	RefSeq:XP_002285168.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:5011754..5014281

Molecular Weight (calculated)

73051.3 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.528

Length

663 amino acids

Sequence
(BLAST)

001: MAPSSIRKAI GSVKDQTSIG IAKIASNMAP DLEVAIVKAT SHDDDPAAEK YVQEILNLTK YSHGYVNACV AAVSKRLGKT RDWVVALKAL VLVHRLLAEG
101: DPGFQREILY ATRRGTRLLN MSDFRDEAHS NSWDHSAFVR TFAMYLDQRL EFILYEKKSS SGGSDGGDER FGTREERWKS PPSRVNDYEY GGYRDEPSSG
201: NYGMRRSRSY GDVGESSGRG GRDGQEGKRA VTPLREMKPE RIFGKMGHLQ RLLDRFLACR PTGLAKNNRM VLIALYPVVR ESFQLYADIC EVLAVLLDRF
301: FEMEYPDCVK AFDAYASTAK QIDELVAFYN WCKDTGVARS SEYPEVQRIT DKLLETLEEF VRDRAKGPKS PERNEEPQPV AREEEPVPDM NEIKALPPPE
401: NYTPPPPPPP EPEPKPQQPQ VTEDLVNLRD EGVTADDQGN RFALALFAGP GANNTNGSWE AFPSNGQPEV TSAWQTPAAE TGKADWELAL VETASNLSRQ
501: KATLAGGFDP LLLNGMYDQG MVRQHVSTAQ MTGGSASSVA LPGLGKSTTP VLALPAPDGT VQTVGQDPFA ASLSIPPPSY VQMADMEKKQ QFLTQEQQLW
601: QQYGRDGMQG QASLAKLAGA GYYAQGPMPM MPYGMPPING MGPPGGVGIY WGWVSLFINR ETP

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.