Factsheet for VIT_11s0016g05900.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20163	Soybean	cytosol	81.3	75.64
KRH03643	Soybean	mitochondrion	81.1	75.18
CDY71126	Canola	cytosol, mitochondrion	62.6	74.65
CDY41768	Canola	cytosol, mitochondrion	58.46	74.62
GSMUA_Achr6P03060_001	Banana	cytosol	75.79	70.38
GSMUA_Achr5P23570_001	Banana	cytosol	75.39	70.28
Solyc07g007820.2.1	Tomato	cytosol	76.57	69.09
CDY12401	Canola	cytosol, mitochondrion	70.87	66.67
AT5G35200.2	Thale cress	cytosol	70.87	66.18
Bra038937.1-P	Field mustard	mitochondrion	70.87	65.45
PGSC0003DMT400017184	Potato	cytosol	54.72	64.5
Zm00001d037484_P002	Maize	cytosol, mitochondrion	69.49	64.07
KXG19435	Sorghum	cytosol, mitochondrion	69.88	62.94
TraesCS7A01G138400.1	Wheat	cytosol	69.09	62.23
TraesCS7D01G140200.1	Wheat	cytosol	69.09	62.23
HORVU7Hr1G028590.1	Barley	cytosol	69.09	62.12
Os06t0175500-01	Rice	plasma membrane	69.49	61.93
TraesCS7B01G040500.1	Wheat	cytosol	68.7	61.88
KXG31293	Sorghum	cytosol	63.58	58.73
Zm00001d045154_P002	Maize	mitochondrion	68.5	58.19
Os02t0803300-01	Rice	cytosol	64.17	57.29
VIT_11s0037g01000.t01	Wine grape	cytosol	57.09	56.86
Zm00001d052008_P003	Maize	cytosol	61.81	56.78
TraesCS6A01G370500.1	Wheat	cytosol	60.43	52.75
HORVU6Hr1G087330.4	Barley	cytosol	60.24	52.58
TraesCS6B01G407500.2	Wheat	cytosol	60.63	52.12
TraesCS6D01G354100.2	Wheat	cytosol	60.63	52.03
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	54.13	48.5
VIT_11s0103g00620.t01	Wine grape	cytosol	53.35	45.85
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	35.43	30.93
VIT_04s0008g05540.t01	Wine grape	cytosol	33.86	25.94
VIT_11s0016g05480.t01	Wine grape	cytosol	32.28	25.91
VIT_18s0089g01330.t01	Wine grape	cytosol	19.68	24.88
VIT_12s0059g01330.t01	Wine grape	cytosol	25.79	22.17
VIT_01s0011g06370.t01	Wine grape	mitochondrion	16.34	21.56

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100252433	wikigene:100252433	MapMan:35.1	EMBL:AM479658
InterPro:ANTH_dom	ProteinID:CAN83852	ProteinID:CAN83852.1	ProteinID:CCB51611	ProteinID:CCB51611.1	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	UniProt:F6HHB5	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	EntrezGene:LOC100252433	wikigene:LOC100252433	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	TIGR:TC55954	UniParc:UPI0002108D9A
ArrayExpress:VIT_11s0016g05900	EnsemblPlantsGene:VIT_11s0016g05900	EnsemblPlants:VIT_11s0016g05900.t01	RefSeq:XP_002285448	RefSeq:XP_002285448.2	RefSeq:XP_003633084
RefSeq:XP_003633084.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:5503422..5512244

Molecular Weight (calculated)

56119.0 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.314

Length

508 amino acids

Sequence
(BLAST)

001: MSGGGTQKSL RKALGAIKDS TTVGLAKVNS DYKELDIAIV KATNHVERPA KEKHIRAIFS AISATRPRAD VAYCIHALAR RLSKTHNWAV ALKTLVVIHR
101: ALREVDPTFH EELINYGRSR SHMLNLAHFK DDSSPNAWDY SAWVRTYALF LEERLECFRV LKYDIETDRP RTKELDTVEL LEQLPALQQL LFRVLGCQPH
201: GAAVHNIVIQ LALSMVALES IKIYSAISDG TVNLVDKFFE MQRNDAVKAL EIYRRAGSQA EKLSEFYEIC KSLDIARGER FIKIEQPPAS FLQAMEEYVR
301: DAPRASTVRK DQETKQVVSE KLAAPKVVLS IEYNKAPEVQ EEHPPSPPPP EPVKVEMPVV EPPDLLGLDD PIPNTAELDE KNAMALAIVP VAETPPSAGP
401: NPANGTTGWE LALVTAPSSN ENATAASKLA GGLDMLTLDS LYDDAIRRNN QNVSYNPWQP VPMGGPMMQQ TAHDPFFASN AVAAPPNVQM AAMGNQQQAF
501: ISSNSNSR

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.