Factsheet for TraesCS6B01G407500.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G354100.2	Wheat	cytosol	96.79	96.62
TraesCS6A01G370500.1	Wheat	cytosol	94.75	96.22
HORVU6Hr1G087330.4	Barley	cytosol	92.39	93.81
Os02t0803300-01	Rice	cytosol	71.74	74.52
KXG31293	Sorghum	cytosol	67.17	72.18
Zm00001d052008_P003	Maize	cytosol	62.27	66.55
TraesCS7B01G040500.1	Wheat	cytosol	59.9	62.77
VIT_11s0016g05900.t01	Wine grape	cytosol	52.12	60.63
GSMUA_Achr5P23570_001	Banana	cytosol	55.67	60.37
GSMUA_Achr6P03060_001	Banana	cytosol	55.84	60.33
CDY41768	Canola	cytosol, mitochondrion	40.44	60.05
Solyc07g007820.2.1	Tomato	cytosol	56.68	59.5
CDY71126	Canola	cytosol, mitochondrion	42.47	58.92
KRH20163	Soybean	cytosol	53.3	57.69
KRH03643	Soybean	mitochondrion	53.3	57.48
AT5G35200.2	Thale cress	cytosol	52.12	56.62
PGSC0003DMT400017184	Potato	cytosol	40.61	55.68
CDY12401	Canola	cytosol, mitochondrion	50.76	55.56
Bra038937.1-P	Field mustard	mitochondrion	51.27	55.09
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	42.13	44.15
TraesCS7B01G430700.2	Wheat	cytosol	10.66	44.06
TraesCS7B01G322300.1	Wheat	mitochondrion	40.78	42.65
TraesCS7B01G393800.2	Wheat	cytosol	41.12	42.63
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	40.27	42.35
TraesCS6B01G181800.1	Wheat	cytosol	40.44	41.42
TraesCS1B01G277200.1	Wheat	cytosol	26.23	25.62
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	27.24	25.24
TraesCS1B01G044800.1	Wheat	cytosol	24.7	23.62
TraesCS5B01G296700.1	Wheat	mitochondrion	11.51	17.8
TraesCS4B01G088300.1	Wheat	mitochondrion	11.17	16.71

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF29
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS6B01G407500	EnsemblPlants:TraesCS6B01G407500.2	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:681919633..681923036

Molecular Weight (calculated)

65874.8 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.472

Length

591 amino acids

Sequence
(BLAST)

001: MAGGGTSIRK YVGALKDSTT VSIAKVNSDY KQLDIAIVKA TNHVERPAKE KYIRDIFMHL NSGRARADVA YCIRALARRL SKTRNWAVAL KTLIVIHRAL
101: REVDPSFRDE LVSYGRSSGQ MLHMSYFKDD SSPDAWDHSA WIRNYALFLE ERLESFRVLN YDVELDPLGT RDVDTTGLLA QLPALSQLLF RLISCQPHGS
201: SSYNTIIQHA LSMVATESVR IQTAINDGIL NLVDKFFDMH RDDAIRALDI YKKALKQAGQ LSGFYETCKT IHIGRDEKLL TIEQPPASFL QAMEDYVRDA
301: PLASKNQDVF ICLQAVLAIE YNRKPEEEEA STPPPPPPQV STSEKEPEPE PVKKVVPRVE QIDLLGMDEP IPDTSELDQN NALALAIVEP DNAPKAAVSS
401: ENVATSWELA LVTAPSASEN VATSRNLAGG LDLLTLDSLY DDAHRHTQQN ASYNPWEQPA PASSAPMMQQ QYQPQPMHNP LYASAQQQQA FMLQQQQAFV
501: LQQQHQYQQQ YQQMMMMGAP SLHRQASSNP SLHRQASSNP SLHRQASSNP SFHRQASSNP FDRSYVPAGG YPNAPAMQLH TGNAYNGTGM M

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.