CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41768	Canola	cytosol, mitochondrion	88.73	94.97
CDY12401	Canola	cytosol, mitochondrion	98.59	77.78
Bra038937.1-P	Field mustard	mitochondrion	99.77	77.27
AT5G35200.2	Thale cress	cytosol	91.31	71.51
VIT_11s0016g05900.t01	Wine grape	cytosol	74.65	62.6
KRH20163	Soybean	cytosol	73.47	57.33
KRH03643	Soybean	mitochondrion	73.0	56.75
CDY42239	Canola	cytosol	43.9	55.49
Solyc07g007820.2.1	Tomato	cytosol	72.3	54.71
GSMUA_Achr5P23570_001	Banana	cytosol	69.25	54.13
GSMUA_Achr6P03060_001	Banana	cytosol	69.01	53.75
Zm00001d037484_P002	Maize	cytosol, mitochondrion	67.37	52.09
KXG19435	Sorghum	cytosol, mitochondrion	67.61	51.06
TraesCS7A01G138400.1	Wheat	cytosol	66.43	50.18
TraesCS7D01G140200.1	Wheat	cytosol	66.43	50.18
HORVU7Hr1G028590.1	Barley	cytosol	66.43	50.09
TraesCS7B01G040500.1	Wheat	cytosol	66.2	50.0
Os06t0175500-01	Rice	plasma membrane	66.67	49.82
Zm00001d045154_P002	Maize	mitochondrion	67.37	47.99
KXG31293	Sorghum	cytosol	60.8	47.09
Os02t0803300-01	Rice	cytosol	62.21	46.57
PGSC0003DMT400017184	Potato	cytosol	46.48	45.94
Zm00001d052008_P003	Maize	cytosol	58.69	45.21
CDY47927	Canola	cytosol	52.58	44.36
TraesCS6A01G370500.1	Wheat	cytosol	58.92	43.13
HORVU6Hr1G087330.4	Barley	cytosol	58.45	42.78
TraesCS6D01G354100.2	Wheat	cytosol	59.15	42.57
TraesCS6B01G407500.2	Wheat	cytosol	58.92	42.47
CDY17660	Canola	cytosol	51.88	38.7
CDY17459	Canola	cytosol	51.41	38.42
CDY36239	Canola	cytosol	51.41	38.35
CDY52732	Canola	cytosol	52.58	38.29
CDY04095	Canola	cytosol	51.17	38.18
CDY38276	Canola	cytosol	53.05	38.18
CDY09433	Canola	cytosol, mitochondrion	50.94	37.61
CDY48813	Canola	cytosol	51.17	37.39
CDX94400	Canola	cytosol	50.94	36.41
CDX89382	Canola	cytosol	51.17	36.27
CDY45299	Canola	mitochondrion	50.23	31.1
CDY53525	Canola	cytosol, mitochondrion	50.7	30.99
CDY15448	Canola	mitochondrion	33.8	25.17
CDY32494	Canola	mitochondrion	32.63	24.3
CDY11530	Canola	cytosol	32.63	23.97
CDY22070	Canola	mitochondrion	33.57	23.75
CDY21904	Canola	mitochondrion	33.1	23.54
CDY35361	Canola	cytosol	32.63	23.52
CDX76976	Canola	cytosol	32.63	23.44
CDY18283	Canola	cytosol, nucleus, peroxisome	26.29	23.33
CDY50184	Canola	mitochondrion	19.72	22.83
CDX68831	Canola	cytosol	31.46	22.67
CDX75232	Canola	cytosol	31.46	22.6
CDX93766	Canola	mitochondrion	19.48	22.37
CDY03862	Canola	mitochondrion	18.78	21.0
CDY12691	Canola	mitochondrion	17.84	20.88
CDY64692	Canola	mitochondrion	18.54	20.84
CDX81471	Canola	mitochondrion	17.84	20.65
CDY57160	Canola	mitochondrion	18.08	20.37
CDY60368	Canola	mitochondrion	17.84	20.11
CDY01884	Canola	mitochondrion	16.67	19.89
CDX96047	Canola	mitochondrion	16.67	19.67
CDY45281	Canola	cytosol	15.73	19.53
CDY41097	Canola	cytosol	15.73	19.48
CDY15531	Canola	cytosol, golgi, nucleus	27.23	19.02
CDY53396	Canola	cytosol	26.29	18.82
CDY18145	Canola	cytosol	20.19	18.45
CDX89917	Canola	cytosol	20.19	18.34
CDX86594	Canola	cytosol, golgi, nucleus	27.23	17.85
CDX76760	Canola	cytosol	19.25	17.56
CDX76977	Canola	cytosol	20.89	17.05
CDX86691	Canola	cytosol, mitochondrion	33.57	14.14
CDY37444	Canola	nucleus	5.63	8.54

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	GO:A0A078JZW6	UniProt:A0A078JZW6	InterPro:ANTH_dom
EnsemblPlants:CDY71126	ProteinID:CDY71126	ProteinID:CDY71126.1	InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00011407001
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EED8A2	SEG:seg

Description

BnaAnng36220DBnaAnng36220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JZW6]

Coordinates

chrLK044574:-:76..2466

Molecular Weight (calculated)

47940.4 Da

IEP (calculated)

5.559

GRAVY (calculated)

-0.292

Length

426 amino acids

Sequence
(BLAST)

001: MSGSQSSLRR YLGAIKDTTT VSLAKVNSGY KELDIAIVKA TNHVERPSKE RYIRAIFMAI SATRPRADVA YCIHALARRL SKTHNWAVAL KTLIVIHRAL
101: REVDQTFHEE VINYSRSRSH MLNMSHFKDD SSPNAWVYST WVRFYALFLE ERLECFRVLK YDVEIDPPRT KELDTPDLLE QLPALQELLF RVLDCQPEGA
201: AVQNHIIQLA LSMVVTESTK IYQALTDGID NLVDKFFEMQ RNDALKALDM YRRAVKQAER LSEFYEVCKS VYVGRGDSFV KIEQPPTSFL QAMEEYVKEA
301: PLAAGAKKEQ AMEKLAAPKE ILAIEYEKPP EVVEEKPKSP EPPVKAEAEK PVEKQPDLLS MDDPAPVVSE LDEKNALALA IVPVTVEQPV STIDFTNGNS
401: SGWELALVTA PSSNEVAAAN SKLVNK

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.