Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05020.1 | CDX71211 | AT2G15270.1 | 21798944 |
| AT1G05020.1 | CDY48221 | AT2G15270.1 | 21798944 |
| AT1G05020.1 | CDX92339 | AT5G22780.1 | 15054111 |
| AT1G05020.1 | CDY26951 | AT5G22780.1 | 15054111 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030600.1-P | Field mustard | cytosol, golgi, nucleus | 95.41 | 90.23 |
| CDX86594 | Canola | cytosol, golgi, nucleus | 93.28 | 87.54 |
| CDY18283 | Canola | cytosol, nucleus, peroxisome | 62.13 | 78.96 |
| CDY53396 | Canola | cytosol | 74.26 | 76.13 |
| AT1G05020.1 | Thale cress | cytosol | 79.51 | 74.27 |
| VIT_12s0059g01330.t01 | Wine grape | cytosol | 48.52 | 50.08 |
| PGSC0003DMT400036091 | Potato | cytosol | 52.46 | 44.08 |
| Solyc12g006000.1.1 | Tomato | cytosol | 52.46 | 43.96 |
| Solyc07g049380.1.1 | Tomato | cytosol | 50.0 | 41.05 |
| PGSC0003DMT400001773 | Potato | nucleus | 49.84 | 40.37 |
| GSMUA_Achr2P18700_001 | Banana | cytosol | 30.98 | 37.72 |
| KRH17907 | Soybean | cytosol | 44.75 | 37.4 |
| GSMUA_Achr7P02300_001 | Banana | plastid | 29.67 | 35.84 |
| CDY11530 | Canola | cytosol | 30.0 | 31.55 |
| CDY42239 | Canola | cytosol | 17.38 | 31.45 |
| CDX75232 | Canola | cytosol | 30.33 | 31.2 |
| CDX76976 | Canola | cytosol | 30.16 | 31.03 |
| CDX68831 | Canola | cytosol | 30.0 | 30.96 |
| CDY35361 | Canola | cytosol | 30.0 | 30.96 |
| CDY41768 | Canola | cytosol, mitochondrion | 18.36 | 28.14 |
| CDY15448 | Canola | mitochondrion | 26.07 | 27.8 |
| CDY32494 | Canola | mitochondrion | 25.57 | 27.27 |
| CDY71126 | Canola | cytosol, mitochondrion | 19.02 | 27.23 |
| CDY21904 | Canola | mitochondrion | 26.72 | 27.21 |
| CDY22070 | Canola | mitochondrion | 26.56 | 26.91 |
| CDX76760 | Canola | cytosol | 19.18 | 25.05 |
| CDY12691 | Canola | mitochondrion | 14.92 | 25.0 |
| CDY03862 | Canola | mitochondrion | 15.57 | 24.93 |
| CDY64692 | Canola | mitochondrion | 15.41 | 24.8 |
| CDX81471 | Canola | mitochondrion | 14.92 | 24.73 |
| CDY47927 | Canola | cytosol | 20.16 | 24.36 |
| CDY60368 | Canola | mitochondrion | 14.92 | 24.07 |
| CDX76977 | Canola | cytosol | 20.49 | 23.95 |
| CDY45281 | Canola | cytosol | 13.44 | 23.91 |
| CDY57160 | Canola | mitochondrion | 14.75 | 23.81 |
| CDY41097 | Canola | cytosol | 13.28 | 23.55 |
| CDY01884 | Canola | mitochondrion | 13.61 | 23.25 |
| CDX93766 | Canola | mitochondrion | 14.1 | 23.18 |
| CDY50184 | Canola | mitochondrion | 13.93 | 23.1 |
| CDY36239 | Canola | cytosol | 21.48 | 22.94 |
| CDY17660 | Canola | cytosol | 21.48 | 22.94 |
| CDX89917 | Canola | cytosol | 17.54 | 22.81 |
| CDY12401 | Canola | cytosol, mitochondrion | 20.16 | 22.78 |
| CDX96047 | Canola | mitochondrion | 13.44 | 22.71 |
| CDY18145 | Canola | cytosol | 17.21 | 22.53 |
| CDY09433 | Canola | cytosol, mitochondrion | 21.31 | 22.53 |
| CDY17459 | Canola | cytosol | 20.66 | 22.11 |
| CDY04095 | Canola | cytosol | 20.66 | 22.07 |
| CDY48813 | Canola | cytosol | 20.98 | 21.96 |
| CDY52732 | Canola | cytosol | 20.49 | 21.37 |
| CDY38276 | Canola | cytosol | 20.49 | 21.11 |
| CDX89382 | Canola | cytosol | 20.0 | 20.3 |
| CDX94400 | Canola | cytosol | 19.67 | 20.13 |
| CDY53525 | Canola | cytosol, mitochondrion | 20.82 | 18.22 |
| CDY45299 | Canola | mitochondrion | 20.33 | 18.02 |
| CDX86691 | Canola | cytosol, mitochondrion | 26.07 | 15.73 |
| CDY37444 | Canola | nucleus | 4.75 | 10.32 |
Protein Annotations
| Gene3D:1.20.58.150 | Gene3D:1.25.40.90 | MapMan:22.1.6.1 | GO:A0A078FQZ4 | UniProt:A0A078FQZ4 | InterPro:ANTH_dom |
| EnsemblPlants:CDY15531 | ProteinID:CDY15531 | ProteinID:CDY15531.1 | InterPro:Clathrin_AP_dom2 | InterPro:ENTH | InterPro:ENTH_VHS |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005543 | GO:GO:0005545 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030136 | GO:GO:0030276 | GO:GO:0048268 | EnsemblPlantsGene:GSBRNA2T00089704001 | InterPro:IPR008942 |
| InterPro:IPR013809 | InterPro:IPR014712 | PFAM:PF07651 | PFscan:PS50942 | PANTHER:PTHR22951 | PANTHER:PTHR22951:SF26 |
| SMART:SM00273 | SUPFAM:SSF48464 | SUPFAM:SSF89009 | UniParc:UPI0004EDD87C | SEG:seg | : |
Description
BnaA08g28150DBnaA08g28150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQZ4]
Coordinates
chrLK032055:-:390893..392725
Molecular Weight (calculated)
67593.8 Da
IEP (calculated)
6.444
GRAVY (calculated)
-0.486
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSKLKKAIG AVKDQTSISL AKVTNGANRS RGGDLTTLEV AILKATSHDE DVPIDDRLVS DILSIISSKK SHAPACAAAI GRRIGRTRSW IVALKSLVLV
101: LRIFQDGDPY FPREVLHAMK RGAKILNLST FRDDSNSRPW DYTAFVRTYA LYLDERLDCF LTGKLQRRYT TNNKNQTGIR SRFNPRIRNK TDEPAVRDMK
201: PATLLDKITY WQRLLDRAIA TRPTGDAKAN RLVKTSLYAV AQESFDLYRD ISDGLALLLD SFFHLPYKSC IHAFQASVRA SKQFEELIGF YELCKSSGVG
301: RTSEYPSVQK ISMELLETLQ EFLKDQSSFP GNNAGMYPSP NSLLLPPPPS TVSSSLSERC CSDYGSFRED AGTSSPSMSC RSEPYGGGGG REDLNGNSFD
401: TVSTKSLPNT PSSVTLKMLD DKERKKKKQE EASDPWEALM LRDEPRKNIE TIPEEPSTTS ERQRDSGNWL LALEETVTTQ VEDTNSMAIV PFGLDDHMPA
501: LQATMEQHNP FLVEPAQPVA KSGELMSTAF SALAVTEFQG NVPDDFEPSS APTFKATGSL PGKCEPFAAF ESFGLGESVS ENGGVHEQSV LQEQQLWLQN
601: QNKIISKHLN
101: LRIFQDGDPY FPREVLHAMK RGAKILNLST FRDDSNSRPW DYTAFVRTYA LYLDERLDCF LTGKLQRRYT TNNKNQTGIR SRFNPRIRNK TDEPAVRDMK
201: PATLLDKITY WQRLLDRAIA TRPTGDAKAN RLVKTSLYAV AQESFDLYRD ISDGLALLLD SFFHLPYKSC IHAFQASVRA SKQFEELIGF YELCKSSGVG
301: RTSEYPSVQK ISMELLETLQ EFLKDQSSFP GNNAGMYPSP NSLLLPPPPS TVSSSLSERC CSDYGSFRED AGTSSPSMSC RSEPYGGGGG REDLNGNSFD
401: TVSTKSLPNT PSSVTLKMLD DKERKKKKQE EASDPWEALM LRDEPRKNIE TIPEEPSTTS ERQRDSGNWL LALEETVTTQ VEDTNSMAIV PFGLDDHMPA
501: LQATMEQHNP FLVEPAQPVA KSGELMSTAF SALAVTEFQG NVPDDFEPSS APTFKATGSL PGKCEPFAAF ESFGLGESVS ENGGVHEQSV LQEQQLWLQN
601: QNKIISKHLN
001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
Arabidopsis Description
AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.