Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18283 | Canola | cytosol, nucleus, peroxisome | 61.1 | 83.12 |
| CDY53396 | Canola | cytosol | 74.43 | 81.68 |
| Bra015381.1-P | Field mustard | cytosol | 77.95 | 79.91 |
| CDY15531 | Canola | cytosol, golgi, nucleus | 74.27 | 79.51 |
| CDX86594 | Canola | cytosol, golgi, nucleus | 73.35 | 73.69 |
| Bra030600.1-P | Field mustard | cytosol, golgi, nucleus | 71.82 | 72.71 |
| VIT_12s0059g01330.t01 | Wine grape | cytosol | 47.93 | 52.96 |
| PGSC0003DMT400036091 | Potato | cytosol | 52.68 | 47.38 |
| Solyc12g006000.1.1 | Tomato | cytosol | 52.37 | 46.98 |
| Solyc07g049380.1.1 | Tomato | cytosol | 49.46 | 43.47 |
| PGSC0003DMT400001773 | Potato | nucleus | 49.31 | 42.76 |
| GSMUA_Achr2P18700_001 | Banana | cytosol | 30.78 | 40.12 |
| KRH17907 | Soybean | cytosol | 44.1 | 39.45 |
| GSMUA_Achr7P02300_001 | Banana | plastid | 28.79 | 37.23 |
| AT4G32285.2 | Thale cress | cytosol | 27.72 | 28.5 |
| AT2G25430.1 | Thale cress | cytosol | 28.18 | 28.18 |
| AT4G02650.1 | Thale cress | mitochondrion | 25.57 | 27.33 |
| AT1G03050.1 | Thale cress | cytosol, mitochondrion | 24.81 | 27.05 |
| AT1G14686.1 | Thale cress | cytosol | 12.4 | 23.89 |
| AT5G35200.2 | Thale cress | cytosol | 19.75 | 23.71 |
| AT2G01600.1 | Thale cress | cytosol, mitochondrion | 20.67 | 23.64 |
| AT2G01920.1 | Thale cress | mitochondrion | 10.72 | 22.44 |
| AT1G68110.1 | Thale cress | mitochondrion | 12.71 | 21.9 |
| AT5G57200.1 | Thale cress | cytosol | 19.6 | 21.66 |
| AT1G25240.2 | Thale cress | mitochondrion | 12.4 | 21.49 |
| AT1G33340.1 | Thale cress | cytosol, mitochondrion, nucleus | 12.1 | 21.12 |
| AT4G25940.1 | Thale cress | cytosol | 19.3 | 20.97 |
| AT1G14910.1 | Thale cress | mitochondrion | 20.21 | 19.08 |
Protein Annotations
| Gene3D:1.20.58.150 | Gene3D:1.25.40.90 | MapMan:22.1.6.1 | EntrezGene:839343 | ProteinID:AAC97997.1 | ProteinID:AEE27780.1 |
| EMBL:AK117462 | InterPro:ANTH_dom | ArrayExpress:AT1G05020 | EnsemblPlantsGene:AT1G05020 | RefSeq:AT1G05020 | TAIR:AT1G05020 |
| RefSeq:AT1G05020-TAIR-G | EnsemblPlants:AT1G05020.1 | TAIR:AT1G05020.1 | Unigene:At.42422 | EMBL:BT005184 | InterPro:Clathrin_AP_dom2 |
| InterPro:ENTH | InterPro:ENTH_VHS | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005543 |
| GO:GO:0005545 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006897 | GO:GO:0008150 | GO:GO:0008289 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0030136 | GO:GO:0030276 | GO:GO:0031410 |
| GO:GO:0048268 | InterPro:IPR008942 | InterPro:IPR013809 | InterPro:IPR014712 | RefSeq:NP_563726.1 | PFAM:PF07651 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007095 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0020030 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50942 |
| PANTHER:PTHR22951 | PANTHER:PTHR22951:SF26 | UniProt:Q9ZVN6 | SMART:SM00273 | SUPFAM:SSF48464 | SUPFAM:SSF89009 |
| UniParc:UPI000000C573 | SEG:seg | : | : | : | : |
Description
AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
Coordinates
chr1:-:1435155..1437763
Molecular Weight (calculated)
72175.7 Da
IEP (calculated)
4.696
GRAVY (calculated)
-0.427
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.