Factsheet for AT5G57200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42239	Canola	cytosol	52.12	91.39
CDY52732	Canola	cytosol	90.36	91.28
Bra020460.1-P	Field mustard	cytosol	91.37	90.91
Bra002750.1-P	Field mustard	cytosol	91.03	90.73
CDY38276	Canola	cytosol	90.86	90.71
CDY47927	Canola	cytosol	72.59	84.95
AT4G25940.1	Thale cress	cytosol	83.76	82.36
Os06t0661400-01	Rice	cytosol	29.27	69.2
KRH37330	Soybean	cytosol	67.34	66.78
KRH12315	Soybean	cytosol	67.17	66.61
VIT_11s0103g00620.t01	Wine grape	cytosol	65.99	65.99
GSMUA_Achr7P04960_001	Banana	cytosol	60.24	64.73
KRH19094	Soybean	cytosol	61.93	63.76
KRH02791	Soybean	cytosol	61.42	63.24
PGSC0003DMT400036570	Potato	cytosol	61.25	63.18
Solyc02g043810.2.1	Tomato	cytosol	61.59	62.98
GSMUA_Achr1P15690_001	Banana	cytosol	59.39	62.79
GSMUA_Achr3P05590_001	Banana	cytosol	56.18	60.81
GSMUA_Achr4P20660_001	Banana	cytosol	56.68	60.14
EES06356	Sorghum	cytosol	56.68	58.77
Zm00001d015430_P001	Maize	cytosol	54.99	56.33
Os02t0175700-01	Rice	plasma membrane	55.33	56.09
KXG20534	Sorghum	cytosol, mitochondrion	54.99	56.03
Zm00001d036672_P005	Maize	cytosol	53.98	55.48
KXG20765	Sorghum	mitochondrion	53.3	55.46
Os06t0699800-00	Rice	cytosol	41.12	55.35
TraesCS6B01G181800.1	Wheat	cytosol	53.98	55.29
TraesCS6D01G143700.1	Wheat	cytosol	54.48	54.86
AT2G01600.1	Thale cress	cytosol, mitochondrion	52.62	54.47
TraesCS7B01G393800.2	Wheat	cytosol	52.45	54.39
HORVU7Hr1G109970.5	Barley	cytosol	52.62	54.37
TraesCS7A01G490500.2	Wheat	cytosol	52.45	54.01
TraesCS6A01G154100.1	Wheat	cytosol	53.47	53.92
TraesCS7D01G476900.2	Wheat	cytosol	52.79	53.89
TraesCS7A01G421900.1	Wheat	mitochondrion	51.95	53.86
TraesCS7D01G414100.1	Wheat	mitochondrion	51.61	53.7
TraesCS7B01G322300.1	Wheat	mitochondrion	51.27	53.63
HORVU7Hr1G097510.7	Barley	mitochondrion	45.85	53.03
HORVU6Hr1G030980.1	Barley	cytosol	54.48	52.02
AT5G35200.2	Thale cress	cytosol	43.82	47.61
TraesCS7B01G430700.2	Wheat	cytosol	11.51	47.55
AT1G14910.1	Thale cress	mitochondrion	51.44	43.93
AT2G25430.1	Thale cress	cytosol	31.47	28.48
AT1G03050.1	Thale cress	cytosol, mitochondrion	28.09	27.71
AT4G32285.2	Thale cress	cytosol	29.61	27.56
AT4G02650.1	Thale cress	mitochondrion	27.24	26.35
AT1G25240.2	Thale cress	mitochondrion	15.57	24.4
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	14.21	22.46
AT1G68110.1	Thale cress	mitochondrion	14.04	21.9
AT2G01920.1	Thale cress	mitochondrion	11.0	20.83
AT1G14686.1	Thale cress	cytosol	11.51	20.06
AT1G05020.1	Thale cress	cytosol	21.66	19.6

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:835826	UniProt:A0A178U8V1	ProteinID:AED96865.1
InterPro:ANTH_dom	ArrayExpress:AT5G57200	EnsemblPlantsGene:AT5G57200	RefSeq:AT5G57200	TAIR:AT5G57200	RefSeq:AT5G57200-TAIR-G
EnsemblPlants:AT5G57200.1	TAIR:AT5G57200.1	ProteinID:BAA96943.1	InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005905
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0031410	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	RefSeq:NP_200530.1	ProteinID:OAO89542.1	PFAM:PF07651	PO:PO:0001016
PO:PO:0001017	PO:PO:0007611	PO:PO:0007616	PO:PO:0009032	PO:PO:0009046	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	UniProt:Q9LVD8
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000009CACF	SEG:seg	:

Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]

Coordinates

chr5:+:23177525..23180853

Molecular Weight (calculated)

66612.3 Da

IEP (calculated)

4.721

GRAVY (calculated)

-0.589

Length

591 amino acids

Sequence
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.