CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036672_P005	Maize	cytosol	91.55	92.35
Os06t0661400-01	Rice	cytosol	37.93	88.0
HORVU7Hr1G109970.5	Barley	cytosol	79.31	80.42
TraesCS7B01G393800.2	Wheat	cytosol	76.55	77.89
TraesCS7A01G490500.2	Wheat	cytosol	77.07	77.87
TraesCS7D01G476900.2	Wheat	cytosol	77.41	77.55
EES06356	Sorghum	cytosol	69.14	70.35
Solyc12g017440.1.1	Tomato	cytosol	35.17	68.23
CDY42239	Canola	cytosol	38.45	66.17
GSMUA_Achr7P04960_001	Banana	cytosol	61.9	65.27
GSMUA_Achr4P20660_001	Banana	cytosol	60.34	62.84
GSMUA_Achr1P15690_001	Banana	cytosol	60.34	62.61
KRH02791	Soybean	cytosol	58.97	59.58
VIT_11s0103g00620.t01	Wine grape	cytosol	59.48	58.38
KRH19094	Soybean	cytosol	57.59	58.19
Solyc02g043810.2.1	Tomato	cytosol	57.41	57.61
PGSC0003DMT400036570	Potato	cytosol	56.9	57.59
KRH12315	Soybean	cytosol	59.14	57.55
KRH37330	Soybean	cytosol	58.97	57.38
EES19899	Sorghum	cytosol, mitochondrion, plastid	55.0	56.56
CDY52732	Canola	cytosol	56.55	56.07
Bra002750.1-P	Field mustard	cytosol	56.9	55.65
CDY38276	Canola	cytosol	56.72	55.57
CDY47927	Canola	cytosol	48.28	55.45
Bra020460.1-P	Field mustard	cytosol	56.55	55.22
AT5G57200.1	Thale cress	cytosol	56.03	54.99
EES01312	Sorghum	cytosol	52.59	54.17
KXG20765	Sorghum	mitochondrion	52.59	53.7
AT4G25940.1	Thale cress	cytosol	55.52	53.58
Bra013934.1-P	Field mustard	cytosol	55.34	53.41
CDX89382	Canola	cytosol	55.34	53.41
CDX94400	Canola	cytosol	54.48	53.02
KXG19435	Sorghum	cytosol, mitochondrion	45.34	46.63
KXG31293	Sorghum	cytosol	43.45	45.82
Solyc12g017430.1.1	Tomato	nucleus	14.83	40.57
PGSC0003DMT400025029	Potato	nucleus	17.93	36.62
EER92480	Sorghum	cytosol, mitochondrion, plastid	30.52	27.44
EES18258	Sorghum	cytosol	28.79	26.81
EES18894	Sorghum	cytosol	28.1	26.16
KXG33814	Sorghum	cytosol, mitochondrion	23.97	24.43
EER96828	Sorghum	mitochondrion	15.86	22.89
EES13983	Sorghum	mitochondrion	15.0	21.64
EES08262	Sorghum	mitochondrion, plastid	14.83	19.68

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	UniProt:A0A194YKM5	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	EnsemblPlants:KXG20534	ProteinID:KXG20534	ProteinID:KXG20534.1
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF21	SMART:SM00273	EnsemblPlantsGene:SORBI_3010G217700
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0003C6A5FB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:56077360..56086409

Molecular Weight (calculated)

65220.8 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.538

Length

580 amino acids

Sequence
(BLAST)

001: MGSGTWRKAY GALKDSTRVG LANFNSEYKD LDIAIVKATN HVECPPKERH FRRILYATSG HRPRADVAYS ICALARRLSK TKNWIVALKT LIVIHRLLRE
101: GDGTFKEDFL TYSFRGNILQ IPLFKDDSSP LAWDCSAWVR TYALYLDERV ECFRVLKYDV ELDRLLKLPQ ASGKAHSRTR TLPLGELLDQ LPALQKLLLR
201: LISCQPEGAA CTNYLVQYAL ALVLKESFKI YCSINDGIIN LVDMYFEMPK YDAIKALEIY KRAGQQAEKL SNFYDHCKHL ELARTFQFPT LRQPPPSFLV
301: TMEEYIREAP RADTESKSSE NHEENQPSDN EEAAPQEAEK PVEDEKQESA EPETEPQPAA GPPEEPVEPQ PRATTGDLLN LDEEVNPMIA DLEESNALAL
401: AIVAPGNENK MSNSRDLFAL DKAGWELALV TAPSNHTNQQ VDNQLAGGFD KLLLDSLYED EARRQQIASV TYTGSLAANP FATSDPFATS NSFAPPSNVQ
501: LAMMAEQQQY YQAQQQQYYQ VPQQQQQQQQ MTMLPPQTYQ QQSQYSAPSS QSGLSNPFGD PFSSLVTMAN PPKQSNSNLV

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.