CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89382	Canola	cytosol	97.99	97.17
Bra013934.1-P	Field mustard	cytosol	97.48	96.67
AT4G25940.1	Thale cress	cytosol	90.44	89.68
CDY42239	Canola	cytosol	46.48	82.2
CDY52732	Canola	cytosol	80.03	81.54
CDY38276	Canola	cytosol	80.54	81.08
CDY47927	Canola	cytosol	64.93	76.63
Os06t0661400-01	Rice	cytosol	27.35	65.2
KRH12315	Soybean	cytosol	63.76	63.76
KRH37330	Soybean	cytosol	63.59	63.59
KRH19094	Soybean	cytosol	61.24	63.59
VIT_11s0103g00620.t01	Wine grape	cytosol	62.08	62.61
KRH02791	Soybean	cytosol	60.23	62.54
GSMUA_Achr7P04960_001	Banana	cytosol	57.21	62.0
PGSC0003DMT400036570	Potato	cytosol	58.22	60.56
Solyc02g043810.2.1	Tomato	cytosol	58.39	60.21
GSMUA_Achr1P15690_001	Banana	cytosol	56.04	59.75
GSMUA_Achr3P05590_001	Banana	cytosol	54.7	59.71
GSMUA_Achr4P20660_001	Banana	cytosol	54.03	57.81
EES06356	Sorghum	cytosol	54.03	56.49
Zm00001d015430_P001	Maize	cytosol	53.19	54.94
KXG20765	Sorghum	mitochondrion	52.18	54.75
KXG20534	Sorghum	cytosol, mitochondrion	53.02	54.48
Zm00001d036672_P005	Maize	cytosol	52.52	54.43
Os02t0175700-01	Rice	plasma membrane	52.18	53.34
TraesCS6B01G181800.1	Wheat	cytosol	51.34	53.03
CDY17660	Canola	cytosol	50.67	52.89
TraesCS6D01G143700.1	Wheat	cytosol	51.85	52.64
TraesCS7B01G393800.2	Wheat	cytosol	50.34	52.63
Os06t0699800-00	Rice	cytosol	38.59	52.39
CDY36239	Canola	cytosol	50.17	52.36
TraesCS7D01G476900.2	Wheat	cytosol	50.84	52.33
CDY17459	Canola	cytosol	50.0	52.28
TraesCS7A01G490500.2	Wheat	cytosol	50.34	52.26
CDY41768	Canola	cytosol, mitochondrion	34.9	52.26
TraesCS7B01G322300.1	Wheat	mitochondrion	49.5	52.21
CDY04095	Canola	cytosol	50.0	52.19
TraesCS7D01G414100.1	Wheat	mitochondrion	49.66	52.11
HORVU7Hr1G109970.5	Barley	cytosol	50.0	52.1
TraesCS7A01G421900.1	Wheat	mitochondrion	49.66	51.93
TraesCS6A01G154100.1	Wheat	cytosol	51.01	51.88
CDY09433	Canola	cytosol, mitochondrion	49.5	51.13
CDY48813	Canola	cytosol	50.0	51.11
CDY71126	Canola	cytosol, mitochondrion	36.41	50.94
HORVU7Hr1G097510.7	Barley	mitochondrion	43.46	50.68
HORVU6Hr1G030980.1	Barley	cytosol	51.51	49.6
CDY12401	Canola	cytosol, mitochondrion	42.79	47.22
TraesCS7B01G430700.2	Wheat	cytosol	11.07	46.15
CDY45299	Canola	mitochondrion	48.49	42.01
CDY53525	Canola	cytosol, mitochondrion	48.83	41.75
CDX75232	Canola	cytosol	28.86	29.01
CDX68831	Canola	cytosol	28.69	28.93
CDX76976	Canola	cytosol	28.52	28.67
CDY35361	Canola	cytosol	28.36	28.6
CDY11530	Canola	cytosol	27.35	28.1
CDY15448	Canola	mitochondrion	24.83	25.87
CDY32494	Canola	mitochondrion	24.83	25.87
CDY21904	Canola	mitochondrion	25.67	25.54
CDY22070	Canola	mitochondrion	25.34	25.08
CDY03862	Canola	mitochondrion	15.44	24.15
CDY64692	Canola	mitochondrion	15.1	23.75
CDY60368	Canola	mitochondrion	14.93	23.55
CDY50184	Canola	mitochondrion	14.26	23.1
CDY12691	Canola	mitochondrion	14.09	23.08
CDY57160	Canola	mitochondrion	14.6	23.02
CDY18283	Canola	cytosol, nucleus, peroxisome	18.46	22.92
CDX81471	Canola	mitochondrion	14.09	22.83
CDY01884	Canola	mitochondrion	13.59	22.69
CDX93766	Canola	mitochondrion	14.09	22.64
CDX89917	Canola	cytosol	17.62	22.39
CDY18145	Canola	cytosol	17.45	22.32
CDX96047	Canola	mitochondrion	13.42	22.16
CDX76760	Canola	cytosol	16.78	21.41
CDY45281	Canola	cytosol	12.25	21.28
CDX76977	Canola	cytosol	18.62	21.26
CDY41097	Canola	cytosol	12.08	20.93
CDY53396	Canola	cytosol	19.97	20.0
CDY15531	Canola	cytosol, golgi, nucleus	20.13	19.67
CDX86594	Canola	cytosol, golgi, nucleus	19.8	18.15
CDY37444	Canola	nucleus	7.55	16.01
CDX86691	Canola	cytosol, mitochondrion	26.17	15.43

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	GO:A0A078DYH4	InterPro:ANTH_dom	EnsemblPlants:CDX94400
ProteinID:CDX94400	ProteinID:CDX94400.1	InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00157536001	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EE06A2	SEG:seg	:

Description

BnaC01g17840D

Coordinates

chrLK031881:+:900723..903775

Molecular Weight (calculated)

67153.6 Da

IEP (calculated)

5.093

GRAVY (calculated)

-0.625

Length

596 amino acids

Sequence
(BLAST)

001: MATFHSFRKA VGALKDSTTV SIAKVNSEFK DLDVAIVKST NHVESAPKER HIRKIFSATS AVRPRADVAY CIHALAKRLS RTHNWVVAIK VLIVIHRTLR
101: EGDPTFRDEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SNEELLEQLP
201: ALQQLLFRLT GCKPEGAGYS NYLIQYALAL VLKESFKVYC AINDGIINLV DLFFEMSRHD AVKALNIYKR AGQQAENLAD FYEHCKSLEL ARNFQFPTLR
301: QPPPSFLATM EEYIKEAPQS GSVQKKLEYY EKEEEEEQDE EEQSAQPEEP AETENQTENT EGDQPLIEEE EKEQIEEEDT KPSFLIDTDD LLGLSEINPK
401: ATEIEDRNAL ALAIYPPGHE APGPSNSLSL IETGGSGWEL ALVTPQNNNN NNTHRPAPDT KYAGGFDKLL LDSLYEDDSA RRQIQLTNAG YGHGGTETAG
501: AAPPQNPFEM QQDPFAMSTN IAPPTNVQMA MQQQQMMMMH QSPYNYSHPH DHHHHQFSAA GPSPSNPFGD HFLALPPPPG SSGQMQQQNS HHHMLL

Best Arabidopsis Sequence Match ( AT4G25940.1 )
(BLAST)

001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L

Arabidopsis Description

Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.