Factsheet for HORVU6Hr1G030980.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G143700.1	Wheat	cytosol	85.95	90.63
TraesCS6B01G181800.1	Wheat	cytosol	82.88	88.91
TraesCS6A01G154100.1	Wheat	cytosol	83.52	88.23
Os02t0175700-01	Rice	plasma membrane	67.53	71.7
EES06356	Sorghum	cytosol	65.91	71.58
Solyc12g017440.1.1	Tomato	cytosol	33.44	69.23
Zm00001d015430_P001	Maize	cytosol	63.97	68.63
CDY42239	Canola	cytosol	37.16	68.25
HORVU7Hr1G109970.5	Barley	cytosol	60.1	65.03
GSMUA_Achr1P15690_001	Banana	cytosol	57.35	63.51
GSMUA_Achr7P04960_001	Banana	cytosol	56.38	63.45
GSMUA_Achr4P20660_001	Banana	cytosol	56.22	62.48
Solyc02g043810.2.1	Tomato	cytosol	53.96	57.79
PGSC0003DMT400036570	Potato	cytosol	53.47	57.77
VIT_11s0103g00620.t01	Wine grape	cytosol	54.44	57.02
KRH02791	Soybean	cytosol	52.18	56.27
CDY47927	Canola	cytosol	45.07	55.25
KRH19094	Soybean	cytosol	51.21	55.23
CDY52732	Canola	cytosol	51.86	54.87
AT5G57200.1	Thale cress	cytosol	52.02	54.48
KRH37330	Soybean	cytosol	52.34	54.36
Bra020460.1-P	Field mustard	cytosol	52.02	54.21
CDY38276	Canola	cytosol	51.7	54.05
Bra002750.1-P	Field mustard	cytosol	51.7	53.96
KRH12315	Soybean	cytosol	51.53	53.52
AT4G25940.1	Thale cress	cytosol	51.05	52.58
CDX89382	Canola	cytosol	50.08	51.58
CDX94400	Canola	cytosol	49.6	51.51
Bra013934.1-P	Field mustard	cytosol	49.92	51.41
HORVU1Hr1G078340.3	Barley	plastid	51.05	49.92
HORVU7Hr1G097510.7	Barley	mitochondrion	41.03	49.71
HORVU7Hr1G028590.1	Barley	cytosol	42.33	46.37
HORVU6Hr1G087330.4	Barley	cytosol	38.93	41.41
Solyc12g017430.1.1	Tomato	nucleus	14.05	41.04
PGSC0003DMT400025029	Potato	nucleus	16.8	36.62
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	28.59	27.4
HORVU0Hr1G000720.3	Barley	cytosol	24.72	25.25
HORVU1Hr1G065590.1	Barley	cytosol	24.39	24.92
HORVU1Hr1G005290.1	Barley	cytosol	24.56	24.6
HORVU4Hr1G015050.1	Barley	mitochondrion	12.6	19.75
HORVU7Hr1G089710.1	Barley	mitochondrion	5.33	18.64
HORVU5Hr1G078270.1	Barley	cytosol	11.79	16.55

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	UniProt:A0A287TS34	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
EnsemblPlantsGene:HORVU6Hr1G030980	EnsemblPlants:HORVU6Hr1G030980.1	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651
PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF21	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009
UniParc:UPI000B469615	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:130977877..130981586

Molecular Weight (calculated)

70361.4 Da

IEP (calculated)

6.016

GRAVY (calculated)

-0.530

Length

619 amino acids

Sequence
(BLAST)

001: GPGGPFPPSG WGQREAASRR GREPRRGGDR AGGSLMGSWR KAYGALKDST RVGLAKVHSD FKDLDIAIVK ATNHVECPPK ERHVRKIFVA TSVTRPRADV
101: AYCIYALSRR LSKTKNWTVA LKTLIVIHRL LREGDPTFKE EFLAHTYTRN LLHMASFKDD SSPLAWDCSA WVRTYALFLE ERVECYRNIK YDIETERLMR
201: SPQCSTKPHS RTRTLPCFDL MEHLPSLQQL LFRLMGCQPE GLACSNFLIQ YALALALKES FKIYCAINDG IINLVDMFFE MPRYDTIKAL AIYKRASMQA
301: ENLADFYEFC KDLELARTFQ FPTLRQPPPS FLAAMEEYIR ETPRPTIRRV DSQERKLLRY SQEAPTEPEK PVEEEKEEPP EPEQEPVPEP TPEPEQQLLA
401: METTGDLLNL DEEVNLFVAD LYEQNVLALA IVGPGDGSKA STCQDLFSGS ASGWELALVT APSSYTSQPI ETKLAGGFDK LLLDSLYEDG ARRQQIASVT
501: YNSNLGQTNP FETNDPFTMS NSFAPPSNVQ LAMVTQQQQF VQAQQHQQQY YYQPQLQYYQ PQLQQQQQYF QAQQQQHKCF QQQPQYSVHP AGTYNPFGDP
601: FTDIVTLAAP PKQGNLSLI

Best Arabidopsis Sequence Match ( AT4G25940.1 )
(BLAST)

001: MATFNSFRKA VGAIKDSTTV SIAKVNSEFK DLDVAIVKAT NHVESAPKER HIRRIFSATS VVQPRADVAY CIHALAKRLS KTRNWVVAIK VLIVIHRTLR
101: EGDPTFREEL LNYSHRGHIL RISNFKDDTS PLAWDCSAWI RTYALFLEER LECYRVLKYD IEAERLPKGS GASSKNVDFN ASQTYRTRML SDEELLEQLP
201: ALQQLLYRLI GCQPEGSAYS NYLIQYALAL VLKESFKIYC AINDGIINLV DMFFEMSRHD AVKALNIYKR AGQQAENLAD FYEYCKGLEL ARNFQFPTLR
301: QPPPSFLATM EDYIKEAPQS GSVQKKLEYQ EKEEEEQEEE EAEHSVQPEE PAEADNQKEN SEGDQPLIEE EEEDQEKIEE EDAKPSFLID TDDLLGLNEI
401: NPKAAEIEDR NALALAIYPP GHEAPGPSNI LSLIETGGSG WELALVTPQN NNNNNNPRPA PNTKLAGGFD NLLLDSLYED DSARRQIQLT NAGYGHGGID
501: TTAAPPNPFQ MQQDPFAMSN NIAPPTNVQM AMQQQQQQQM TMMHQSPYNY THPHDYHQNH HHHQFSAGPS PSNPFGDAFL ALPPPPGSAG PQQNNHHHML
601: L

Arabidopsis Description

Putative clathrin assembly protein At4g25940 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYT2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.