Factsheet for Zm00001d015430_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06356	Sorghum	cytosol	90.81	91.93
Os02t0175700-01	Rice	plasma membrane	72.44	71.7
Solyc12g017440.1.1	Tomato	cytosol	36.22	69.9
TraesCS6D01G143700.1	Wheat	cytosol	70.02	68.82
CDY42239	Canola	cytosol	39.86	68.25
TraesCS6B01G181800.1	Wheat	cytosol	67.76	67.76
Zm00001d036672_P005	Maize	cytosol	66.9	67.13
TraesCS6A01G154100.1	Wheat	cytosol	68.11	67.06
HORVU6Hr1G030980.1	Barley	cytosol	68.63	63.97
GSMUA_Achr1P15690_001	Banana	cytosol	61.53	63.51
GSMUA_Achr7P04960_001	Banana	cytosol	59.79	62.73
GSMUA_Achr4P20660_001	Banana	cytosol	60.31	62.48
KRH02791	Soybean	cytosol	58.06	58.36
KRH19094	Soybean	cytosol	57.54	57.84
PGSC0003DMT400036570	Potato	cytosol	57.19	57.59
Solyc02g043810.2.1	Tomato	cytosol	57.37	57.27
CDY47927	Canola	cytosol	49.74	56.83
VIT_11s0103g00620.t01	Wine grape	cytosol	58.06	56.68
CDY52732	Canola	cytosol	57.02	56.24
Bra002750.1-P	Field mustard	cytosol	57.71	56.16
CDY38276	Canola	cytosol	57.37	55.91
Zm00001d038892_P001	Maize	mitochondrion	54.42	55.77
Bra020460.1-P	Field mustard	cytosol	57.19	55.56
KRH12315	Soybean	cytosol	57.02	55.2
KRH37330	Soybean	cytosol	57.02	55.2
AT5G57200.1	Thale cress	cytosol	56.33	54.99
CDX89382	Canola	cytosol	55.63	53.41
Bra013934.1-P	Field mustard	cytosol	55.46	53.24
CDX94400	Canola	cytosol	54.94	53.19
AT4G25940.1	Thale cress	cytosol	54.94	52.75
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	48.7	48.28
Zm00001d043773_P003	Maize	cytosol	51.3	47.21
Zm00001d037484_P002	Maize	cytosol, mitochondrion	44.71	46.82
Zm00001d052008_P003	Maize	cytosol	42.98	44.85
Zm00001d045154_P002	Maize	mitochondrion	44.54	42.98
Solyc12g017430.1.1	Tomato	nucleus	14.04	38.21
PGSC0003DMT400025029	Potato	nucleus	17.5	35.56
Zm00001d046121_P001	Maize	cytosol	16.64	26.45
Zm00001d030399_P001	Maize	cytosol	15.94	26.29
Zm00001d028620_P001	Maize	plasma membrane	28.77	25.98
Zm00001d047804_P001	Maize	plasma membrane	28.25	25.71
Zm00001d010228_P001	Maize	cytosol	27.38	25.69
Zm00001d035652_P001	Maize	cytosol	25.82	24.96
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.05	23.96
Zm00001d005869_P001	Maize	mitochondrion	15.25	22.11
Zm00001d049990_P001	Maize	mitochondrion	14.04	20.88
Zm00001d007272_P001	Maize	mitochondrion	14.21	20.76
Zm00001d049002_P001	Maize	mitochondrion	14.21	20.25
Zm00001d031760_P001	Maize	mitochondrion	13.34	15.65
Zm00001d047867_P001	Maize	cytosol	8.84	15.5

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100383870	MapMan:22.1.6.2	InterPro:ANTH_dom	ProteinID:AQK68855.1
EMBL:BT068500	UniProt:C0PJN1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF21	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000195CEC1	EnsemblPlantsGene:Zm00001d015430	EnsemblPlants:Zm00001d015430_P001	EnsemblPlants:Zm00001d015430_T001	SEG:seg

Description

Putative clathrin assembly protein

Coordinates

chr5:-:89673713..89677257

Molecular Weight (calculated)

65001.9 Da

IEP (calculated)

5.042

GRAVY (calculated)

-0.427

Length

577 amino acids

Sequence
(BLAST)

001: MGSWRKAYGA LKDSTKVGLA KVNSEFKELD IAIVKATNHV ECPPKERHVR KILLATSANR PRADLSYCIY ALSRRLSKTK NWIVALKTLI VVHRLLREGD
101: PMFKEEFLAY SSRGNILHIA NFKDDSSQSA WDCSAWIRAY GCFLEERLEC LRVLRYDIET ERLVRYPQTS SKVHSKTRTL PSPELLEQLP ALQQLLFRVV
201: GVQPEGAACS NYLIQYALAL VLKESFKIYC SINDGIINLV DMFFEMPKYD AINALAIYKR AGLQAENLAE FYDFCKQLEL ARTFQFPTLR QPPASFLATM
301: EEYIREAPRP SIKSEESEEP KLLTYEQEAP EEPENAVEEE KEEPSQKPEP QPVPDPEPHP QQTTGDLLNL EAEVNPSALE LEQSNALALA IVAPGDYKPP
401: ASQSMFDVNS SGWELALVNA PSTHTSQAVE TNLAGGFDKL LLDSLYEDEA RRQQIAGATY TGSLGAANPF CTNASDPFTM SSRFAPPANV QLALMAQNQQ
501: QYYQAQQYYQ AQLYFQPQQQ QYFQQHQQTL AMPMPNMYHH QYQYSVPTSG ASNPFGDPFS DLAPMGAPAK QSNSVFL

Best Arabidopsis Sequence Match ( AT1G14910.1 )
(BLAST)

001: MGTLQSWRRA YGALKDTTKV GLVRVNSDYA ELDVAIVKAT NHVECPPKDR HLRKIFLATS AIRPRADVAY CIHALSRRLH KTRNWTVALK ALLVIHRLLR
101: DGDPTFREEL LNFSQKGRIM QISNFKDDSS PVAWDCSGWV RTYALFLEER LECFRVLKYD IEAERLPKVS PGQEKGYSKT RDLDGEKLLE QLPALQQLLH
201: RLIGCKPEGA AKHNHIIQYA LSLVLKESFK VYCAINEGII NLVEKFFEMP RHEAIKALEI YKRAGLQAGN LSAFYEVCKG LELARNFQFP VLREPPQSFL
301: TTMEEYMRDA PQMVDVTSGP LLLTYTPDDG LTSEDVGPSH EEHETSSPSD SAVVPSEETQ LSSQSPPSVE TPQNFIDTDD LLGLHDDTPD PLAILDQNAL
401: ALALVSNDVD SSPFSFGQAR DLDPSGWELA LVTTPSNDIS AATERQLAGG LDTLTLNSLY DDGALRAAQQ PAYGVPASNP FEVQDLFAFS DSVSPPSAVN
501: NPFGLYEPTY HQQEQQPQLQ VAPSPANPFG DFGEFPIVPV SEPQSTTSFG AFPVPVSEPS NTTGFGEIPV VPVTEPPNTT AFGEFPVVPV SEPQNITGFG
601: ALPVTPASEP SNTTGFGEFP VVSVSAPQNT TGFGALPVIP VSEPSKTTGL GEFPVVPVSE PQNTTGFGEF PVNAGAHEQH NSNNPFGSTG FL

Arabidopsis Description

Putative clathrin assembly protein At1g14910 [Source:UniProtKB/Swiss-Prot;Acc:P94017]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.