Factsheet for VIT_11s0103g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42239	Canola	cytosol	44.5	78.04
Os06t0661400-01	Rice	cytosol	31.3	74.0
KRH12315	Soybean	cytosol	70.73	70.13
KRH37330	Soybean	cytosol	69.88	69.3
GSMUA_Achr7P04960_001	Banana	cytosol	62.77	67.45
PGSC0003DMT400036570	Potato	cytosol	64.81	66.84
Solyc02g043810.2.1	Tomato	cytosol	65.31	66.78
KRH19094	Soybean	cytosol	64.64	66.55
KRH02791	Soybean	cytosol	64.64	66.55
GSMUA_Achr1P15690_001	Banana	cytosol	62.94	66.55
AT5G57200.1	Thale cress	cytosol	65.99	65.99
CDY52732	Canola	cytosol	65.14	65.81
CDY38276	Canola	cytosol	65.48	65.37
GSMUA_Achr4P20660_001	Banana	cytosol	61.42	65.17
Bra002750.1-P	Field mustard	cytosol	65.31	65.09
CDY47927	Canola	cytosol	55.5	64.95
Bra020460.1-P	Field mustard	cytosol	64.81	64.48
AT4G25940.1	Thale cress	cytosol	64.81	63.73
GSMUA_Achr3P05590_001	Banana	cytosol	57.7	62.45
Bra013934.1-P	Field mustard	cytosol	63.28	62.23
CDX94400	Canola	cytosol	62.61	62.08
CDX89382	Canola	cytosol	63.11	62.06
EES06356	Sorghum	cytosol	58.38	60.53
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	57.36	59.79
KXG20534	Sorghum	cytosol, mitochondrion	58.38	59.48
Zm00001d036672_P005	Maize	cytosol	57.7	59.3
KXG20765	Sorghum	mitochondrion	55.84	58.1
Zm00001d015430_P001	Maize	cytosol	56.68	58.06
Os02t0175700-01	Rice	plasma membrane	56.85	57.63
TraesCS6B01G181800.1	Wheat	cytosol	56.01	57.37
HORVU7Hr1G109970.5	Barley	cytosol	55.33	57.17
TraesCS6D01G143700.1	Wheat	cytosol	56.51	56.9
TraesCS7D01G476900.2	Wheat	cytosol	55.16	56.3
TraesCS7B01G393800.2	Wheat	cytosol	54.15	56.14
Os06t0699800-00	Rice	cytosol	41.62	56.04
TraesCS6A01G154100.1	Wheat	cytosol	55.5	55.97
TraesCS7A01G490500.2	Wheat	cytosol	54.31	55.92
TraesCS7D01G414100.1	Wheat	mitochondrion	52.62	54.75
TraesCS7B01G322300.1	Wheat	mitochondrion	52.12	54.51
HORVU6Hr1G030980.1	Barley	cytosol	57.02	54.44
TraesCS7A01G421900.1	Wheat	mitochondrion	52.28	54.21
HORVU7Hr1G097510.7	Barley	mitochondrion	46.7	54.01
VIT_11s0016g05900.t01	Wine grape	cytosol	45.85	53.35
TraesCS7B01G430700.2	Wheat	cytosol	12.86	53.15
VIT_11s0037g01000.t01	Wine grape	cytosol	44.33	51.37
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	30.8	31.27
VIT_04s0008g05540.t01	Wine grape	cytosol	31.3	27.9
VIT_11s0016g05480.t01	Wine grape	cytosol	29.44	27.49
VIT_18s0089g01330.t01	Wine grape	cytosol	17.6	25.87
VIT_12s0059g01330.t01	Wine grape	cytosol	23.86	23.86
VIT_01s0011g06370.t01	Wine grape	mitochondrion	14.55	22.34

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100257158	wikigene:100257158	MapMan:22.1.6.2	InterPro:ANTH_dom
ProteinID:CBI40102	ProteinID:CBI40102.3	InterPro:Clathrin_AP_dom2	UniProt:D7UBI7	InterPro:ENTH	InterPro:ENTH_VHS
EMBL:FN596751	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100257158	wikigene:LOC100257158	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00019862D7
ArrayExpress:VIT_11s0103g00620	EnsemblPlantsGene:VIT_11s0103g00620	EnsemblPlants:VIT_11s0103g00620.t01	RefSeq:XP_002269299	RefSeq:XP_002269299.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:16736925..16744163

Molecular Weight (calculated)

66468.0 Da

IEP (calculated)

5.278

GRAVY (calculated)

-0.502

Length

591 amino acids

Sequence
(BLAST)

001: MGTFESFRKA YGALKDSTMV GLAKVNSEFK DLDIAIVKAT NHVECPPKER HVRKIFSATS VVRPRSDVAY CIHALARRLA KTKNWIVALK TLIVIHRTLR
101: EGDPTFREEL LNYSNRGHVL QISNFKDDSS PLAWDCSAWV RTYALFLEER LECFRVLKYD IESERLTKSS QGATKTHSRT RHLASEDLLD QLPALQQLLY
201: RLICCLPEGA AFGNYLIQYA LALVLKESFK IYCAINDGII NLVDMFFDMP RHDAVKALNI YKRAGKQAEN LADFYEFCKG LDLARHFQFP TLRQPPPSFL
301: ATMEEYIKEA PQTGSHSKNY QDHQEPEPQK PDEPPPPETE KQVEVDEKPV VETQEEPETK NEVEAPPLIA TDTTADLLGL NEINPKAAEL EESNALALAI
401: IPPGNDPASA VNSGLGDFGG LNASGWELAL VTTPSPNISQ ATDNKLAGGF NKLLLDSLYE DEAARMRLQQ QNAGYGFGMT TQNAPNPFEA NDPFSMSNSI
501: APSTNVQMAL MTQQQHQMML QQQQQQQQLQ YQQQQYKQQQ GMMSMLPHQY LPQYPQQPMQ MQNMTSSNPF GDPVFAQPQS AMPQQGNYGL L

Best Arabidopsis Sequence Match ( AT5G57200.1 )
(BLAST)

001: MGTFTSFRKA YGALKDTTTV GLAKVNSEFK DLDIAIVKAT NHVESPPKER HVRKIFSATS VIQPRADVAY CIHALSKRLS KTRNWVVAMK VLIVIHRTLR
101: EGDPTFREEL LNYSHRRHIL RISNFKDDTS PLAWDCSAWV RTYALFLEER LECYRVLKYD IEAERLPKAS GAASKTHRTR MLSGEDLLEQ LPALQQLLYR
201: LIGCQPEGAA YSNYLIQYAL ALVLKESFKI YCAINDGIIN LVDMFFEMSR HDAVKALNIY KRAGQQAENL AEFYDYCKGL ELARNFQFPT LRQPPPSFLA
301: TMEEYIKEAP QSGSVQKKLE YQEKEEEEQE QEEEQPEEPA EEENQNENTE NDQPLIEEEE EEPKEEIEVE EAKPSPLIDT DDLLGLHEIN PKAAEIEQNN
401: AFSLAIYPPG HETSAPSNSL SLIEAGGSGW ELALVTPQNN NNNNNNPRPV IATKLGGGFD NLLLDSLYED DTARRQIQLT NAGYGFGATA IPGALASSNP
501: NPFGVQQDPF AMSNNMAPPT NVQMAMQQQQ MMMMNNQSPY NNNYSPYHHH QFSPNPSTSS SPNPFGDPFL ALPAPPSSTT QQQYSPNHML L

Arabidopsis Description

Putative clathrin assembly protein At5g57200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.