Factsheet for VIT_11s0037g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g05900.t01	Wine grape	cytosol	56.86	57.09
GSMUA_Achr4P05920_001	Banana	cytosol	58.43	54.38
VIT_11s0103g00620.t01	Wine grape	cytosol	51.37	44.33
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	48.24	43.39
Solyc12g010530.1.1	Tomato	cytosol	49.8	42.76
PGSC0003DMT400020390	Potato	cytosol	49.61	42.59
KRH54979	Soybean	cytosol	39.22	39.53
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	30.59	26.8
VIT_01s0011g06370.t01	Wine grape	mitochondrion	18.04	23.9
VIT_11s0016g05480.t01	Wine grape	cytosol	29.41	23.7
VIT_04s0008g05540.t01	Wine grape	cytosol	30.59	23.53
VIT_18s0089g01330.t01	Wine grape	cytosol	17.45	22.14
VIT_12s0059g01330.t01	Wine grape	cytosol	23.73	20.47

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	EMBL:AM466590	InterPro:ANTH_dom	ProteinID:CAN65874
ProteinID:CAN65874.1	ProteinID:CBI36596	ProteinID:CBI36596.3	InterPro:Clathrin_AP_dom2	ncoils:Coil	UniProt:D7U1I0
InterPro:ENTH	InterPro:ENTH_VHS	EMBL:FN596499	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001BE47D1
ArrayExpress:VIT_11s0037g01000	EnsemblPlantsGene:VIT_11s0037g01000	EnsemblPlants:VIT_11s0037g01000.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:+:9883371..9900820

Molecular Weight (calculated)

56587.1 Da

IEP (calculated)

4.928

GRAVY (calculated)

-0.319

Length

510 amino acids

Sequence
(BLAST)

001: MAAGGSTQQS LRRAIGALKD STKVGLAKVN SGYKALDIAI VKATNHDEVL AKEKHIRTIF GALSSSTPRA DVAYCIQALA KRLAKTQNWA VALKTLIVMH
101: RAMREIDSTF REEFINYSQN RALMLNLSHF KDDSGPNAWN YSAWVRTYAL YLEEHLECFR LLKYDIQTYH SRTRELDTPD LLEQLPALQQ LLFRLLACQP
201: EGAAVYNKLI QYALSILAGE CVKLYGAITN GILNLVDKYF EMQKHDAVRA LEIYQKAGNQ AEKLSEFFEI CRGLDFGRVQ FVKIEQPPAT FMTAMEEYVK
301: DTPCTLADQK QDFDVEEILD PSLTSPEPPR SDQIEAAAKL QDLDELIKEA SELDEKNALG VAIFTSENPS NSANGLNLSC QTTGWELALV TAPSSSGAAV
401: AESKLAGGMD KLTLDSLYDD AIAGRANQNR TYHMGQLGSN PFELANSTRD PFYASSNIAP STNVEMAGIT QQEEGLMMQQ QQYRQPLIGE DPTNPFGNPF
501: VEPGIPSHFK

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.