Factsheet for GSMUA_Achr4P05920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0037g01000.t01	Wine grape	cytosol	54.38	58.43
GSMUA_Achr5P23570_001	Banana	cytosol	56.93	57.25
GSMUA_Achr6P03060_001	Banana	cytosol	55.84	55.94
GSMUA_Achr7P04960_001	Banana	cytosol	50.55	50.36
GSMUA_Achr4P13420_001	Banana	cytosol	48.36	49.63
GSMUA_Achr4P20660_001	Banana	cytosol	50.0	49.19
GSMUA_Achr1P15690_001	Banana	cytosol	49.82	48.84
GSMUA_Achr9P21890_001	Banana	cytosol	49.82	48.75
GSMUA_Achr3P05590_001	Banana	cytosol	47.08	47.25
PGSC0003DMT400020390	Potato	cytosol	45.07	41.58
Solyc12g010530.1.1	Tomato	cytosol	44.34	40.91
KRH54979	Soybean	cytosol	35.58	38.54
GSMUA_Achr10P...	Banana	mitochondrion	28.83	31.29
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	29.74	30.7
GSMUA_Achr11P...	Banana	cytosol	29.01	30.58
GSMUA_Achr11P...	Banana	cytosol	24.64	29.61
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	27.92	29.03
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	27.01	23.42
GSMUA_Achr2P18700_001	Banana	cytosol	21.17	23.15
GSMUA_Achr7P02300_001	Banana	plastid	20.62	22.38
GSMUA_Achr8P22890_001	Banana	mitochondrion	15.69	21.66
GSMUA_Achr7P02390_001	Banana	cytosol	14.78	19.47
GSMUA_Achr7P18620_001	Banana	mitochondrion	13.14	18.56
GSMUA_Achr3P20230_001	Banana	mitochondrion	10.04	16.62

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr4G05920_001
EnsemblPlants:GSMUA_Achr4P05920_001	EnsemblPlants:GSMUA_Achr4T05920_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0SLF9
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002966B61	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At5g35200 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05920_001]

Coordinates

chr4:+:4571526..4582244

Molecular Weight (calculated)

61182.3 Da

IEP (calculated)

5.094

GRAVY (calculated)

-0.285

Length

548 amino acids

Sequence
(BLAST)

001: MAGVGNTQQS IRKALGALKD STTVGLAKVN SDYKELDVAI VKATNHVERL VKEKHIRTIF DAISASRPRS DVTYCINALA RRLAKTHNWA VALKTLIVLH
101: RALREVDPTF REELITYTKT RGFMLNLSHF KDDSSPSAWD YSSWVRTYAL YLEERLECFR VLKYDIETER SRTSEAETIE LLEHLPALQQ LLFRLLGCQP
201: EGAAMYNNVI RYALSIVASE SIKIYSSINT GTLNLVDKFF EMLRHDAVRA IEIYKKTGSQ AERLSEFYEI CKGLEVGRGE NFAKIEQPPA SFIEAMEDYV
301: KDDTFLVGVL LFFSGLESYI RTLNWTYQAT SFISYSIGSA GKSSRMYIEK MAPVSETHEI STTPKPVLAV TTDLLELDDF NHRAEEMEEK NSLVLAITAD
401: DNPLKSTSDE TSGTSGWEFV LVGTPNSNEN FVAQSKLAGG LDRLTLDSLY DDAFARTMNP GGGGYHTGQV APNPFDTSHY FQDLFYASNG IAPSASVEMV
501: TMAQQQALMQ QQQQALGQDG TNPFGNPFGP TGVLYAQDPS HNPYTGYM

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.