Factsheet for GSMUA_Achr4P13420_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21890_001	Banana	cytosol	88.02	83.93
EES19899	Sorghum	cytosol, mitochondrion, plastid	75.84	71.81
Os05t0549000-01	Rice	plasma membrane	76.22	71.78
Zm00001d038892_P001	Maize	mitochondrion	75.09	71.23
Os01t0694900-01	Rice	cytosol	75.47	70.95
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	74.72	70.62
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	74.72	70.62
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	74.53	70.57
TraesCS3A01G258900.1	Wheat	cytosol	72.85	69.59
TraesCS3D01G259000.2	Wheat	cytosol	73.22	69.45
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	73.03	69.39
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	72.28	68.08
EES01312	Sorghum	cytosol	71.72	68.03
KRH42533	Soybean	cytosol	70.79	66.55
KRH58627	Soybean	nucleus	70.6	66.26
PGSC0003DMT400075923	Potato	cytosol	69.29	65.72
Solyc04g007860.2.1	Tomato	cytosol, plastid	69.1	65.54
HORVU1Hr1G078340.3	Barley	plastid	74.72	63.03
KRH38239	Soybean	cytosol	65.17	62.82
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	67.98	62.37
AT2G01600.1	Thale cress	cytosol, mitochondrion	65.36	61.12
CDY17660	Canola	cytosol	65.17	60.95
Bra024871.1-P	Field mustard	cytosol	65.17	60.95
CDY36239	Canola	cytosol	64.98	60.77
CDY17459	Canola	cytosol	64.79	60.7
CDY04095	Canola	cytosol	64.23	60.07
Bra017439.1-P	Field mustard	cytosol	64.23	60.07
GSMUA_Achr7P04960_001	Banana	cytosol	61.61	59.82
CDY09433	Canola	cytosol, mitochondrion	64.04	59.27
CDY48813	Canola	cytosol	64.61	59.18
Zm00001d043773_P003	Maize	cytosol	68.91	58.69
GSMUA_Achr3P05590_001	Banana	cytosol	59.74	58.42
GSMUA_Achr1P15690_001	Banana	cytosol	60.67	57.96
GSMUA_Achr4P20660_001	Banana	cytosol	59.36	56.91
GSMUA_Achr6P03060_001	Banana	cytosol	52.62	51.37
GSMUA_Achr5P23570_001	Banana	cytosol	51.87	50.83
GSMUA_Achr4P05920_001	Banana	cytosol	49.63	48.36
AT1G14910.1	Thale cress	mitochondrion	61.8	47.69
Bra026647.1-P	Field mustard	cytosol	63.86	47.36
CDY45299	Canola	mitochondrion	59.93	46.51
CDY53525	Canola	cytosol, mitochondrion	60.49	46.34
Bra026179.1-P	Field mustard	cytosol, mitochondrion	59.93	41.78
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	31.84	32.02
GSMUA_Achr11P...	Banana	cytosol	30.52	31.35
GSMUA_Achr10P...	Banana	mitochondrion	29.59	31.29
GSMUA_Achr11P...	Banana	cytosol	25.47	29.82
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	28.09	28.46
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	28.28	23.89
GSMUA_Achr2P18700_001	Banana	cytosol	22.1	23.55
GSMUA_Achr7P02300_001	Banana	plastid	21.72	22.97
GSMUA_Achr8P22890_001	Banana	mitochondrion	14.98	20.15
GSMUA_Achr7P18620_001	Banana	mitochondrion	14.42	19.85
GSMUA_Achr7P02390_001	Banana	cytosol	14.98	19.23
GSMUA_Achr3P20230_001	Banana	mitochondrion	11.24	18.13

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSMUA_Achr4G13420_001
EnsemblPlants:GSMUA_Achr4P13420_001	EnsemblPlants:GSMUA_Achr4T13420_001	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M0SNK7
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002968613	SEG:seg	:	:	:

Description

Putative clathrin assembly protein At2g01600 [Source:GMGC_GENE;Acc:GSMUA_Achr4G13420_001]

Coordinates

chr4:-:9999617..10008137

Molecular Weight (calculated)

59535.9 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.282

Length

534 amino acids

Sequence
(BLAST)

001: MATLQSWRKA VGALKDTTTV GLANLNSDFK DLDVAIVKAT NHVECPPKER HLRKILLATS ITRPRADVAY CIHALARRLA KTHNWTVALK TLIVIHRTLR
101: EGDPTFREEL LNFSQRAKIL QLSNFKDDSS PIGWDCSAWV RTYALFLEER LECFRILKYD VEAERLIRPS QGSEKGHSKT REVDSEDLLE QLPALQQLLY
201: RLIGCRPEGA AISNYVVQYA LALILKESFK IYCAINDGII NLVDKFFEMP RHEAVKALEI YRRAGQQAAS LSEFYEVCRG LELARNFQFP NLREPPQSFL
301: ATMEEYIREA PRVVSISREP LEYPERLLLT YKVEAVPATV DEEETPIAEP ESEPGPLPST IEVASPATPV KINGSDTGDL LGLNETNSYA SAIEDTNALA
401: LSIVPADATT NSGTVQDQVF DPTGWELALV TTPSSNNATA VESKLGGGFD KLTLDSLYDE AAYRQQQQQQ QQLYGVPPPN PFMTTDPFAM SNQVAAPPAV
501: QMAAMAQQQQ QMSMFMQSNP FAQPLNPFGN PQLI

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.