Factsheet for TraesCS1D01G375800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	99.47	99.47
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	99.11	99.29
Os05t0549000-01	Rice	plasma membrane	87.96	87.65
EES19899	Sorghum	cytosol, mitochondrion, plastid	87.26	87.41
Zm00001d038892_P001	Maize	mitochondrion	86.9	87.21
HORVU1Hr1G078340.3	Barley	plastid	96.99	86.57
TraesCS3D01G259000.2	Wheat	cytosol	78.23	78.51
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	79.82	77.49
GSMUA_Achr9P21890_001	Banana	cytosol	74.51	75.18
GSMUA_Achr4P13420_001	Banana	cytosol	70.62	74.72
KRH42533	Soybean	cytosol	69.03	68.66
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	68.32	68.08
KRH58627	Soybean	nucleus	68.14	67.66
Solyc04g007860.2.1	Tomato	cytosol, plastid	66.19	66.43
PGSC0003DMT400075923	Potato	cytosol	66.02	66.25
KRH38239	Soybean	cytosol	63.89	65.16
AT2G01600.1	Thale cress	cytosol, mitochondrion	63.54	62.87
Bra024871.1-P	Field mustard	cytosol	63.19	62.52
CDY17660	Canola	cytosol	63.19	62.52
CDY36239	Canola	cytosol	62.83	62.17
CDY09433	Canola	cytosol, mitochondrion	62.65	61.35
CDY48813	Canola	cytosol	63.19	61.23
CDY04095	Canola	cytosol	61.59	60.95
Bra017439.1-P	Field mustard	cytosol	61.59	60.95
CDY17459	Canola	cytosol	61.42	60.88
TraesCS7D01G414100.1	Wheat	mitochondrion	53.45	53.17
TraesCS6D01G143700.1	Wheat	cytosol	55.22	53.15
TraesCS7D01G476900.2	Wheat	cytosol	53.27	51.99
AT1G14910.1	Thale cress	mitochondrion	60.88	49.71
CDY53525	Canola	cytosol, mitochondrion	60.71	49.21
Bra026647.1-P	Field mustard	cytosol	62.65	49.17
CDY45299	Canola	mitochondrion	59.82	49.13
TraesCS7D01G140200.1	Wheat	cytosol	48.5	48.58
Bra026179.1-P	Field mustard	cytosol, mitochondrion	60.0	44.26
TraesCS6D01G354100.2	Wheat	cytosol	43.72	41.72
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	30.27	30.54
TraesCS1D01G036500.1	Wheat	cytosol	28.32	25.89
TraesCS1D01G266400.1	Wheat	mitochondrion	29.38	25.08
TraesCS4D01G085400.1	Wheat	mitochondrion	13.81	19.75
TraesCS5D01G304500.1	Wheat	mitochondrion	14.87	19.0

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF56
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS1D01G375800	EnsemblPlants:TraesCS1D01G375800.1	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:452486102..452493818

Molecular Weight (calculated)

62564.0 Da

IEP (calculated)

4.901

GRAVY (calculated)

-0.389

Length

565 amino acids

Sequence
(BLAST)

001: MASMQSWRKA YGAIKDTTTV SLANINSDFK DLDVAIVKAT NHVECPPKER HLRKIAAATS IARPRADIAY CIHALSRRLS KTRNWIVALK TLVVVHRLLR
101: EGDPTFREEL LNFTQRGRIL QLSNFKDDSS PIAWDCSAWV RTYGQFLEER LECFRILKYD VEAERLSKQG QGPEKGHSRT RDLDSQDLLE QLPALQQLLY
201: RLVGCRPEGA ANNNYLVQYA LALVLKESFK IYCAINDGII NLVDKFFEMA RHEALKALEI YRRAGQQAGN LSDFYENCRG LELARNFQFP TLREPPQTFL
301: VTMEEYVRDA PRMVPVREPL EFPERLLLTY KPEESEEVPE PDPVEEERPP VEEPVPVQPI PEVVSPPTKP VVADTGDLLG LNDPSPGVSA IEESNALALA
401: IVTSDASTST TGSTAWQDKG FDPTGWELAL VTAPSNTNSS ATDSQLGGGL DKLILDSLYD EGAYRQSQQQ QLYGSSAPNP FMTSDPFAMS NHVAAPSSVQ
501: MAAMSQQQQQ IPTMIHQNPF GPPIQPQHPG AGPAAVNPFL DSGFGAFPAA NNSQQQANPF GGSLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.