Factsheet for VIT_01s0011g05330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58627	Soybean	nucleus	79.01	78.73
KRH42533	Soybean	cytosol	78.48	78.35
PGSC0003DMT400075923	Potato	cytosol	76.72	77.26
Solyc04g007860.2.1	Tomato	cytosol, plastid	76.72	77.26
KRH38239	Soybean	cytosol	72.84	74.55
GSMUA_Achr4P13420_001	Banana	cytosol	68.08	72.28
GSMUA_Achr9P21890_001	Banana	cytosol	71.25	72.14
Bra024871.1-P	Field mustard	cytosol	71.6	71.1
CDY17660	Canola	cytosol	71.6	71.1
AT2G01600.1	Thale cress	cytosol, mitochondrion	71.43	70.93
CDY36239	Canola	cytosol	71.25	70.75
CDY09433	Canola	cytosol, mitochondrion	71.08	69.84
CDY17459	Canola	cytosol	70.19	69.82
Os05t0549000-01	Rice	plasma membrane	69.66	69.66
CDY04095	Canola	cytosol	70.02	69.53
Bra017439.1-P	Field mustard	cytosol	70.02	69.53
CDY48813	Canola	cytosol	71.43	69.47
Zm00001d038892_P001	Maize	mitochondrion	68.78	69.27
EES19899	Sorghum	cytosol, mitochondrion, plastid	68.61	68.97
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	68.08	68.32
TraesCS1A01G369700.1	Wheat	cytosol, mitochondrion, plastid	67.9	68.14
TraesCS1B01G388800.1	Wheat	cytosol, mitochondrion, plastid	67.55	67.91
Os01t0694900-01	Rice	cytosol	67.55	67.43
EES01312	Sorghum	cytosol	66.49	66.96
TraesCS3B01G292000.2	Wheat	cytosol, mitochondrion, plastid	65.61	66.19
TraesCS3A01G258900.1	Wheat	cytosol	65.26	66.19
TraesCS3D01G259000.2	Wheat	cytosol	65.26	65.72
HORVU1Hr1G078340.3	Barley	plastid	67.9	60.82
Zm00001d009452_P007	Maize	cytosol, mitochondrion, plastid	62.26	60.65
Zm00001d043773_P003	Maize	cytosol	63.84	57.74
VIT_11s0103g00620.t01	Wine grape	cytosol	59.79	57.36
AT1G14910.1	Thale cress	mitochondrion	68.78	56.36
Bra026647.1-P	Field mustard	cytosol	70.37	55.42
CDY45299	Canola	mitochondrion	66.49	54.8
CDY53525	Canola	cytosol, mitochondrion	67.2	54.66
VIT_11s0016g05900.t01	Wine grape	cytosol	48.5	54.13
Bra026179.1-P	Field mustard	cytosol, mitochondrion	66.14	48.96
VIT_11s0037g01000.t01	Wine grape	cytosol	43.39	48.24
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	31.92	31.1
VIT_11s0016g05480.t01	Wine grape	cytosol	30.16	27.01
VIT_04s0008g05540.t01	Wine grape	cytosol	31.39	26.85
VIT_18s0089g01330.t01	Wine grape	cytosol	18.17	25.62
VIT_01s0011g06370.t01	Wine grape	mitochondrion	16.4	24.16
VIT_12s0059g01330.t01	Wine grape	cytosol	22.93	22.0

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100254309	wikigene:100254309	MapMan:22.1.6.2	InterPro:ANTH_dom
ProteinID:CBI26868	ProteinID:CBI26868.3	InterPro:Clathrin_AP_dom2	UniProt:D7T8P7	InterPro:ENTH	InterPro:ENTH_VHS
EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100254309	wikigene:LOC100254309	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF56	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	TIGR:TC69793
UniParc:UPI00015C8829	ArrayExpress:VIT_01s0011g05330	EnsemblPlantsGene:VIT_01s0011g05330	EnsemblPlants:VIT_01s0011g05330.t01	unigene:Vvi.6702	RefSeq:XP_002284689
RefSeq:XP_002284689.2	RefSeq:XP_002284692	RefSeq:XP_002284692.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:4934385..4948993

Molecular Weight (calculated)

62657.0 Da

IEP (calculated)

5.089

GRAVY (calculated)

-0.340

Length

567 amino acids

Sequence
(BLAST)

001: MATLQTWRKA YGALKDSTKV GLAHVNSDFA DLDVAVVKAT NHVECPPKER HIRKILVATS AIRPRADVAY CIHALSRRLA KTHNWTVALK TLIVIHRALR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRILKYD IEAERLPRPA QGQEKGYSRT RELDSEELLE QLPALQQLLH
201: RLIGCRPEGA AIGNYVIQYA LALVLKESFK IYCAINDGII NLVDKFFEMP RHEAFKALEI YKRAGQQAGS LSDFYEVCKG LELARNFQFP VLREPPQSFL
301: ATMEDYIREA PRMVSVPNEP LLQLTYKSED APSPSEDTKL PSDDEPKLEP SENVEVSSVE VAHPPPPLPP NNLDDGDLLG INVVAHDASA IEESNALALA
401: IVPSGSAAAP TFDSGAFQAK DFDPTGWELA LVTTPSSNIS SANERQLAGG LDTLTLTSLY DEGAYRAAQQ PVYGAPAPNP FEVHDPFAVS NGVAAPPAVQ
501: MAAMAQQQPN PFAPYPTYQQ QQQQQQQQHL MFGPPNPFGD AGFGAFPRNT TTAHPQNNNP FGSTSLL

Best Arabidopsis Sequence Match ( AT2G01600.1 )
(BLAST)

001: MGTLQSWRKA YGALKDSTKV GLVRVNSEYA DLDVAIVKAT NHVECPPKDR HLRKIFAATS VTRARADVAY CIHALSRRLH KTRNWTVALK TLIVIHRLLR
101: EGDPTFREEL LNFSQRGRIL QLSNFKDDSS PIAWDCSAWV RTYALFLEER LECFRVLKYD TEAERLPKSN PGQDKGYSRT RDLDGEELLE QLPALQQLLY
201: RLIGCRPEGA ANHNHVIQYA LALVLKESFK VYCAINDGII NLIDKFFEMA KHEAITSLEI YKRAGQQARS LSDFYEACKG LELARNFQFP VLREPPQSFL
301: TTMEEYIKEA PRVVDVPAEP LLLTYRPDDG LTTEDTEPSH EEREMLPSDD VVVVSEETEP SPPPPPSANA QNFIDTDDLW GLNTGAPDTS VIEDQNALAL
401: AIVSTDADPP TPHFGQPNNY DPTGWELALV TAPSSDISAS TERKLAGGLD TLTLSSLYDD GAYIASQRPV YGAPAPNPFA SHDPFASSNG TAPPPQQQAV
501: NNPFGAYQQT YQHQPQPTYQ HQSNPPTNNS NPFGDFGEFP VNPVSQQPNT SGYGDFSVNQ HNNPFRSTGL I

Arabidopsis Description

Putative clathrin assembly protein At2g01600 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.