Factsheet for VIT_12s0055g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43936	Soybean	cytosol, mitochondrion	66.15	64.92
KRH58332	Soybean	mitochondrion	64.6	64.27
KRH10492	Soybean	cytosol, mitochondrion	65.46	63.93
CDY15448	Canola	mitochondrion	62.03	63.11
CDY32494	Canola	mitochondrion	61.17	62.24
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	61.86	61.96
Bra030518.1-P	Field mustard	mitochondrion	62.71	61.86
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	61.68	61.68
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	56.01	61.39
Bra032561.1-P	Field mustard	mitochondrion	62.54	60.97
AT1G03050.1	Thale cress	cytosol, mitochondrion	62.71	60.93
GSMUA_Achr11P...	Banana	cytosol	54.3	60.77
GSMUA_Achr10P...	Banana	mitochondrion	52.41	60.4
AT4G02650.1	Thale cress	mitochondrion	62.2	59.25
CDY22070	Canola	mitochondrion	60.65	58.64
CDY21904	Canola	mitochondrion	60.31	58.6
Bra036250.1-P	Field mustard	mitochondrion	60.31	58.4
CDY18145	Canola	cytosol	46.74	58.37
Bra033369.1-P	Field mustard	cytosol	46.91	58.21
CDX89917	Canola	cytosol	46.91	58.21
PGSC0003DMT400059062	Potato	cytosol	58.76	57.38
Solyc11g044860.1.1	Tomato	cytosol	47.25	55.0
CDY37444	Canola	nucleus	24.74	51.25
Zm00001d010228_P001	Maize	cytosol	51.2	48.46
HORVU0Hr1G000720.3	Barley	cytosol	50.34	48.35
HORVU1Hr1G065590.1	Barley	cytosol	50.17	48.18
TraesCS1A01G266200.1	Wheat	cytosol	50.0	48.1
EES18258	Sorghum	cytosol	51.37	47.99
TraesCS1B01G277200.1	Wheat	cytosol	49.14	47.27
Os01t0881100-01	Rice	mitochondrion	42.1	47.02
VIT_11s0016g05480.t01	Wine grape	cytosol	50.34	46.29
Os05t0426100-00	Rice	cytosol	52.41	45.8
VIT_04s0008g05540.t01	Wine grape	cytosol	49.83	43.74
TraesCS1D01G266400.1	Wheat	mitochondrion	49.66	43.66
KXG33814	Sorghum	cytosol, mitochondrion	41.24	42.18
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	39.86	41.8
CDX86691	Canola	cytosol, mitochondrion	61.68	35.51
VIT_11s0016g05900.t01	Wine grape	cytosol	30.93	35.43
VIT_01s0011g05330.t01	Wine grape	cytosol, mitochondrion	31.1	31.92
VIT_12s0059g01330.t01	Wine grape	cytosol	31.44	30.96
VIT_11s0103g00620.t01	Wine grape	cytosol	31.27	30.8
VIT_11s0037g01000.t01	Wine grape	cytosol	26.8	30.59
Zm00001d047867_P001	Maize	cytosol	16.49	29.18
VIT_18s0089g01330.t01	Wine grape	cytosol	18.56	26.87
VIT_01s0011g06370.t01	Wine grape	mitochondrion	14.09	21.3

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:100243618	wikigene:100243618	MapMan:22.1.6.2	InterPro:ANTH_dom
ProteinID:CCB46154	ProteinID:CCB46154.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	UniProt:F6H1T5
EMBL:FN595228	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	EntrezGene:LOC100243618	wikigene:LOC100243618	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	TIGR:TC55998
UniParc:UPI0001984646	ArrayExpress:VIT_12s0055g00790	EnsemblPlantsGene:VIT_12s0055g00790	EnsemblPlants:VIT_12s0055g00790.t01	unigene:Vvi.14342	RefSeq:XP_002270803
RefSeq:XP_002270803.1	RefSeq:XP_010657582.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:14064578..14066642

Molecular Weight (calculated)

64901.7 Da

IEP (calculated)

4.787

GRAVY (calculated)

-0.412

Length

582 amino acids

Sequence
(BLAST)

001: MAPSKIRRAL GAVKDQTSIG LAKVGSSNSL ADLDVAIVKA TRHEEYPAEE RHIREILSLT CYSRAFVSAC VNTLARRLNK TKNWTVALKT LMLIHRLLAD
101: GDPSYEQEIF FSTRRGTRIL NMSDFRDHSS QSNSWDYSAF VRTYALYLDE RLEFRMQGKR GKRSAFEYEE DEEEGGAAAQ ARNTPVCDMK TVDIFSRINH
201: LQQLLERFLA CRPTGEAKSN RVVLVALYPI VKESFQIYYD ITEIMGILIE RFMELEVQDC VKVHEIFYRV LKQFDELDSF YTWCRSTGIA RSSEYPEVEK
301: IALKKLDLMD EFIRDKAALA QSRKNRIVGP EEPVVEAKEP EPVEENINAI KALPAPEGWE VPVEEEKEEP KEEEKKEKKE INVQEEGDLL NLGDDAVTTQ
401: EHGSQLALAL FDGGAVANPA APAWEAFTTD DAADWETALV QSASGLSQQK TNLGGGFDML LLDGMYQQAT MAQATTGGTF GASGSASSVA FGSIGRPAML
501: ALPAPPTSND GASTRSVDPF AASLAVAPPT YVQMSEMEKK QKLLMEEQFL WQQYARDGMP GHLGIPKFQG SPYNNGGYTH SY

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.