Factsheet for PGSC0003DMT400059062

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g044860.1.1	Tomato	cytosol	77.01	91.8
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	68.79	70.45
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	57.38	58.76
KRH43936	Soybean	cytosol, mitochondrion	57.89	58.18
KRH10492	Soybean	cytosol, mitochondrion	58.05	58.05
KRH58332	Soybean	mitochondrion	56.04	57.09
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	50.34	56.5
CDY15448	Canola	mitochondrion	54.19	56.47
GSMUA_Achr10P...	Banana	mitochondrion	47.32	55.84
CDY32494	Canola	mitochondrion	53.02	55.24
Bra030518.1-P	Field mustard	mitochondrion	54.53	55.08
Bra032561.1-P	Field mustard	mitochondrion	54.7	54.61
AT1G03050.1	Thale cress	cytosol, mitochondrion	54.7	54.42
AT4G02650.1	Thale cress	mitochondrion	54.7	53.36
GSMUA_Achr11P...	Banana	cytosol	46.14	52.88
CDY21904	Canola	mitochondrion	53.02	52.75
CDY22070	Canola	mitochondrion	53.02	52.49
Bra036250.1-P	Field mustard	mitochondrion	52.85	52.41
CDY18145	Canola	cytosol	40.77	52.15
CDX89917	Canola	cytosol	40.77	51.81
Bra033369.1-P	Field mustard	cytosol	40.6	51.6
HORVU1Hr1G065590.1	Barley	cytosol	46.98	46.2
HORVU0Hr1G000720.3	Barley	cytosol	46.81	46.04
TraesCS1A01G266200.1	Wheat	cytosol	45.81	45.12
EES18258	Sorghum	cytosol	46.81	44.78
TraesCS1B01G277200.1	Wheat	cytosol	45.13	44.46
PGSC0003DMT400035762	Potato	cytosol	46.98	43.82
Zm00001d010228_P001	Maize	cytosol	44.97	43.58
Os05t0426100-00	Rice	cytosol	47.99	42.94
PGSC0003DMT400040963	Potato	cytosol	46.14	42.9
CDY37444	Canola	nucleus	20.13	42.7
Os01t0881100-01	Rice	mitochondrion	37.25	42.61
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	43.62	42.21
KXG33814	Sorghum	cytosol, mitochondrion	39.26	41.12
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	37.92	40.72
TraesCS1D01G266400.1	Wheat	mitochondrion	45.13	40.63
CDX86691	Canola	cytosol, mitochondrion	54.19	31.95
PGSC0003DMT400075923	Potato	cytosol	28.02	29.66
PGSC0003DMT400036570	Potato	cytosol	28.02	29.14
Zm00001d047867_P001	Maize	cytosol	15.1	27.36
PGSC0003DMT400017184	Potato	cytosol	17.62	24.36
PGSC0003DMT400025029	Potato	nucleus	11.24	23.59
PGSC0003DMT400020390	Potato	cytosol	23.32	23.4
PGSC0003DMT400036091	Potato	cytosol	28.19	23.14
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	16.44	22.27
PGSC0003DMT400058608	Potato	mitochondrion	14.93	22.25
PGSC0003DMT400075705	Potato	mitochondrion	14.09	21.43
PGSC0003DMT400001773	Potato	nucleus	26.68	21.12

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102579975	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1C3R1	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400022939
PGSC:PGSC0003DMG400022939	EnsemblPlants:PGSC0003DMT400059062	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000296E172	RefSeq:XP_006352083.1	SEG:seg	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022939]

Coordinates

chr11:+:31013129..31015497

Molecular Weight (calculated)

66465.6 Da

IEP (calculated)

4.828

GRAVY (calculated)

-0.458

Length

596 amino acids

Sequence
(BLAST)

001: MAPSKLRKAI GAVKDQTSIS LAKVGGSNCL SDLEVAIVKA TRHQEYPPEE RHIREILSLT AYSRANIGAC VDNISRRLGK TKNWVVALKS IMLIHRLLSD
101: GDPSYEQEIF FATRQGTRLL NMSEFRDTRS NSWDYSSLVR TYSLYLDEQL EYRMQSRRGK RSAYAYDEEL DNVEPETVVV KQPTPLSEMK NEHIFSRMQY
201: LVQLLDRFLA CKPAGLARTN RTVFVALYPL VNESFQIYYQ ITEIITILID KFQELSIPES VKVHEIFCRI NKQYVDLEQF YNWCKTVGIG RSSEYPDIEN
301: IPQKKLDLID DFIREKSILG QNGNAMRYEP KSELVEKTQE PEPEPEPEQA MNEIKALPPP EGIPEEIKEE KHEEENKEVV KTQDVADFLN LGENSLTMEE
401: HGDQLAVALF DGGGPTTDGP STTTSPWEAF NNSGDWETAL VQHTSHLSNQ KASLPGGFNT LMLDGMYQQG AVAQVVASSG VVATGSASSV ALGSAGRPSM
501: LALPAPPSAD GEAQSIAGTT TDPFAASLAI APPSYVQMSE MEKKQRLLVD EQVMWQQYQK DGMQGQVGLA RTTQSNPYAY NTGGLHTNLL ARGSLN

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.