Factsheet for PGSC0003DMT400058608

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
cytosol 2
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005070.2.1	Tomato	mitochondrion	94.75	95.23
PGSC0003DMT400075705	Potato	mitochondrion	58.25	59.44
VIT_01s0011g06370.t01	Wine grape	mitochondrion	49.5	51.43
KRH58584	Soybean	mitochondrion	46.75	46.87
AT1G25240.2	Thale cress	mitochondrion	44.0	46.68
CDY60368	Canola	mitochondrion	44.0	46.56
Bra024772.1-P	Field mustard	mitochondrion	43.75	46.42
KRH42490	Soybean	cytosol	46.75	46.29
CDY57160	Canola	mitochondrion	43.5	46.03
CDY64692	Canola	mitochondrion	43.5	45.91
Bra012491.1-P	Field mustard	mitochondrion	43.25	45.77
CDY03862	Canola	mitochondrion	43.5	45.67
Bra033960.1-P	Field mustard	mitochondrion	39.5	43.41
CDY12691	Canola	mitochondrion	39.5	43.41
AT1G68110.1	Thale cress	mitochondrion	41.0	43.27
KRG89239	Soybean	cytosol, mitochondrion	41.5	43.23
CDX81471	Canola	mitochondrion	39.75	43.21
CDY01884	Canola	mitochondrion	38.25	42.86
KRH49763	Soybean	mitochondrion	41.5	42.67
Bra004282.1-P	Field mustard	mitochondrion	38.25	42.38
CDX96047	Canola	mitochondrion	38.25	42.38
AT1G14686.1	Thale cress	cytosol	34.25	40.41
CDY45281	Canola	cytosol	33.5	39.07
CDY41097	Canola	cytosol	33.25	38.66
Bra026195.1-P	Field mustard	cytosol	33.5	37.64
GSMUA_Achr7P18620_001	Banana	mitochondrion	36.0	37.11
AT2G01920.1	Thale cress	mitochondrion	28.25	36.22
Zm00001d049990_P001	Maize	mitochondrion	34.0	35.05
EES13983	Sorghum	mitochondrion	34.75	34.58
Os08t0467300-01	Rice	mitochondrion	34.0	34.34
GSMUA_Achr8P22890_001	Banana	mitochondrion	33.5	33.75
GSMUA_Achr7P02390_001	Banana	cytosol	33.5	32.21
EER96828	Sorghum	mitochondrion	32.25	32.09
Zm00001d005869_P001	Maize	mitochondrion	30.25	30.4
TraesCS5A01G297400.1	Wheat	mitochondrion	28.5	30.24
TraesCS5B01G296700.1	Wheat	mitochondrion	28.75	30.1
GSMUA_Achr3P20230_001	Banana	mitochondrion	24.25	29.31
Zm00001d031760_P001	Maize	mitochondrion	33.75	27.44
HORVU5Hr1G078270.1	Barley	cytosol	28.5	25.85
TraesCS5D01G304500.1	Wheat	mitochondrion	28.5	25.79
HORVU7Hr1G089710.1	Barley	mitochondrion	10.25	23.16
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	19.25	17.5
PGSC0003DMT400035762	Potato	cytosol	25.0	15.65
PGSC0003DMT400036570	Potato	cytosol	22.25	15.53
PGSC0003DMT400040963	Potato	cytosol	24.75	15.44
PGSC0003DMT400075923	Potato	cytosol	21.5	15.28
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	23.25	15.1
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	21.75	14.95
PGSC0003DMT400059062	Potato	cytosol	22.25	14.93
PGSC0003DMT400020390	Potato	cytosol	20.5	13.8
PGSC0003DMT400036091	Potato	cytosol	23.5	12.95
PGSC0003DMT400017184	Potato	cytosol	13.5	12.53
PGSC0003DMT400001773	Potato	nucleus	22.75	12.09
PGSC0003DMT400025029	Potato	nucleus	5.5	7.75

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102606396	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1C2Z1	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400022769
PGSC:PGSC0003DMG400022769	EnsemblPlants:PGSC0003DMT400058608	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF19	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI000296DA2C	RefSeq:XP_006364081.1	SEG:seg	:	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022769]

Coordinates

chr1:+:303558..305537

Molecular Weight (calculated)

46256.2 Da

IEP (calculated)

6.199

GRAVY (calculated)

-0.180

Length

400 amino acids

Sequence
(BLAST)

001: MRLWRKAFGL VKDHKSLWLA SLSRRTSFRN PEMEAAVIKA TSHDELTIDM KNVDRVYKWL RLSPSHLKSL IWSISLRMEK TKSWVVAIKG LMLMHGVYSS
101: KIPAIQRIGR LPFDLSNFKD GYSDPYKIWG INEFIRAYFT YLDQKSSLLF MNLQERRNLQ NLEHVNDDNN NNNVVVIVEG HYSMIQDLVL LQKLQYLLDM
201: LLEIRPLCGN AVVPLVLEAM DCVMIEVFDV YSRICNGIAR ILLRIYSAGK VEASMALRIV QKATIQGEEL SVYFELCQSI GVKNAAEFPT IEQIPYEDIK
301: ELEEIINGVS EKESRIIPYQ HEGKDIVVVR EKNGDQNIEN LEKESKLRTV ITDNWERFDE DLMQNDGVKI APYAINPFEI CTYNVPSKKT PELPDLISFL

Best Arabidopsis Sequence Match ( AT1G25240.2 )
(BLAST)

001: MMKLWKRASG ALKDRKTLFT IGFSRKTSFR NPDLDSAIIH ATSHDDSSVD YHNAHRVYKW IRSSPANLKP LVHALSSRVN RTRSWIVALK ALMLVHGVLC
101: CKVTSLQEIR RLPFDLSDFS DGHSRPSKTW GFNAFIRAYF SFLDQYSFFL SDQIRRRHKK PQLDSVNQEL ERIEKLQSLL HMLLQIRPMA DNMKKTLILE
201: AMDCVVIEIF DIYGRICSAI AKLLIKIHPA AGKAEAVIAL KIVKKATSQG EDLALYFEFC KEFGVSNAHD IPKFVTIPEE DIKAIEKVIN GVEEEEVKKK
301: EDEVEEEKSI ILVERPELQT IITDKWEIFE DDFCFTCKDI KETDQHRKFN MDPSPLPLIV IDEPVYFTHT LPDLITF

Arabidopsis Description

ENTH/VHS/GAT family protein [Source:TAIR;Acc:AT1G25240]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.