Factsheet for PGSC0003DMT400017184

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007820.2.1	Tomato	cytosol	97.22	74.42
KRH20163	Soybean	cytosol	71.69	56.59
KRH03643	Soybean	mitochondrion	71.46	56.2
VIT_11s0016g05900.t01	Wine grape	cytosol	64.5	54.72
GSMUA_Achr6P03060_001	Banana	cytosol	67.29	53.02
GSMUA_Achr5P23570_001	Banana	cytosol	65.66	51.93
Zm00001d037484_P002	Maize	cytosol, mitochondrion	64.5	50.45
KXG19435	Sorghum	cytosol, mitochondrion	64.97	49.65
TraesCS7A01G138400.1	Wheat	cytosol	63.81	48.76
HORVU7Hr1G028590.1	Barley	cytosol	63.81	48.67
TraesCS7D01G140200.1	Wheat	cytosol	63.57	48.58
TraesCS7B01G040500.1	Wheat	cytosol	63.57	48.58
Os06t0175500-01	Rice	plasma membrane	63.34	47.89
Bra038937.1-P	Field mustard	mitochondrion	59.86	46.91
AT5G35200.2	Thale cress	cytosol	59.16	46.88
Os02t0803300-01	Rice	cytosol	61.72	46.75
CDY12401	Canola	cytosol, mitochondrion	58.24	46.48
CDY71126	Canola	cytosol, mitochondrion	45.94	46.48
Zm00001d045154_P002	Maize	mitochondrion	63.81	45.99
KXG31293	Sorghum	cytosol	58.47	45.82
CDY41768	Canola	cytosol, mitochondrion	41.53	44.97
Zm00001d052008_P003	Maize	cytosol	54.52	42.5
HORVU6Hr1G087330.4	Barley	cytosol	55.45	41.07
TraesCS6B01G407500.2	Wheat	cytosol	55.68	40.61
TraesCS6A01G370500.1	Wheat	cytosol	54.29	40.21
TraesCS6D01G354100.2	Wheat	cytosol	55.22	40.2
PGSC0003DMT400036570	Potato	cytosol	45.01	33.86
PGSC0003DMT400025029	Potato	nucleus	22.27	33.8
PGSC0003DMT400075923	Potato	cytosol	44.08	33.75
PGSC0003DMT400020390	Potato	cytosol	42.46	30.81
PGSC0003DMT400040963	Potato	cytosol	29.93	20.12
PGSC0003DMT400035762	Potato	cytosol	28.54	19.25
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	26.22	18.34
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	24.36	18.04
PGSC0003DMT400059062	Potato	cytosol	24.36	17.62
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	14.85	14.55
PGSC0003DMT400058608	Potato	mitochondrion	12.53	13.5
PGSC0003DMT400075705	Potato	mitochondrion	11.6	12.76
PGSC0003DMT400036091	Potato	cytosol	21.35	12.67
PGSC0003DMT400001773	Potato	nucleus	19.95	11.42

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1A8N4	PFAM:PF07651
EnsemblPlantsGene:PGSC0003DMG400006704	PGSC:PGSC0003DMG400006704	EnsemblPlants:PGSC0003DMT400017184	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0002959069	SEG:seg	:	:

Description

Clathrin assembly protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006704]

Coordinates

chr7:+:3963455..3967772

Molecular Weight (calculated)

47612.0 Da

IEP (calculated)

4.401

GRAVY (calculated)

-0.531

Length

431 amino acids

Sequence
(BLAST)

001: MAHFKDDSSP NAWDYSAWVR SYALFLEERL ECFRVLKYDV ETDRPRTKDL DTPELLEQLP ALQQLLYRIN GCQPQGASAH NFVIQLALSM VATESIKIYN
101: AISDGTVNLV DKFFEMQRND ALRSLDIYRR AGQQAEALSE FYEICKNIDA GRGQKFIKIE QPPASFLQAM EEYVRDAPRA STVRKDSEPK VILAIEYKKD
201: PDVKDAGSHS PPPPEPEKEP EPKPEPVKTE APPAEPADLL SMDDPSPAAA ELDEKNSLAL AIIPVGSTYP PTSTGSNLTN GTSGWELALV EAPSSNESAT
301: TASKLGGGLD KLTLDSLYDD AMRQTNQNVS YNPWEPAPAV APMMQNVGYD PFYVSNMVAA PTNVQMAAMA NQQQAFMLQQ QQQQQQHHMM MMTPQQQPTA
401: NPFANPYGAA ANPYGPGMPV QTAYNPYTGL I

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.