CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71126	Canola	cytosol, mitochondrion	77.78	98.59
CDY41768	Canola	cytosol, mitochondrion	71.48	96.98
Bra038937.1-P	Field mustard	mitochondrion	97.78	96.0
AT5G35200.2	Thale cress	cytosol	88.33	87.68
VIT_11s0016g05900.t01	Wine grape	cytosol	66.67	70.87
KRH20163	Soybean	cytosol	68.7	67.95
KRH03643	Soybean	mitochondrion	68.52	67.52
Solyc07g007820.2.1	Tomato	cytosol	67.04	64.3
GSMUA_Achr5P23570_001	Banana	cytosol	64.26	63.67
GSMUA_Achr6P03060_001	Banana	cytosol	64.07	63.25
Zm00001d037484_P002	Maize	cytosol, mitochondrion	63.15	61.89
KXG19435	Sorghum	cytosol, mitochondrion	63.15	60.46
TraesCS7A01G138400.1	Wheat	cytosol	62.22	59.57
HORVU7Hr1G028590.1	Barley	cytosol	62.22	59.47
TraesCS7D01G140200.1	Wheat	cytosol	62.04	59.4
TraesCS7B01G040500.1	Wheat	cytosol	62.04	59.4
Os06t0175500-01	Rice	plasma membrane	62.41	59.12
PGSC0003DMT400017184	Potato	cytosol	46.48	58.24
Zm00001d045154_P002	Maize	mitochondrion	62.22	56.19
CDY42239	Canola	cytosol	35.0	56.08
KXG31293	Sorghum	cytosol	56.85	55.82
Os02t0803300-01	Rice	cytosol	58.7	55.71
Zm00001d052008_P003	Maize	cytosol	55.19	53.89
TraesCS6A01G370500.1	Wheat	cytosol	55.0	51.03
HORVU6Hr1G087330.4	Barley	cytosol	54.81	50.86
TraesCS6B01G407500.2	Wheat	cytosol	55.56	50.76
TraesCS6D01G354100.2	Wheat	cytosol	55.56	50.68
CDY17660	Canola	cytosol	47.96	45.36
CDY47927	Canola	cytosol	42.22	45.15
CDY36239	Canola	cytosol	47.59	45.01
CDY17459	Canola	cytosol	47.04	44.56
CDY04095	Canola	cytosol	47.04	44.48
CDY38276	Canola	cytosol	48.7	44.43
CDY52732	Canola	cytosol	47.96	44.27
CDY09433	Canola	cytosol, mitochondrion	46.67	43.67
CDY48813	Canola	cytosol	46.85	43.4
CDX94400	Canola	cytosol	47.22	42.79
CDX89382	Canola	cytosol	47.59	42.76
CDY45299	Canola	mitochondrion	47.04	36.92
CDY53525	Canola	cytosol, mitochondrion	47.22	36.59
CDY15448	Canola	mitochondrion	30.56	28.85
CDY32494	Canola	mitochondrion	29.63	27.97
CDY11530	Canola	cytosol	29.81	27.76
CDY22070	Canola	mitochondrion	30.93	27.74
CDY21904	Canola	mitochondrion	30.56	27.55
CDY35361	Canola	cytosol	30.0	27.41
CDX76976	Canola	cytosol	30.0	27.32
CDX68831	Canola	cytosol	29.26	26.73
CDX75232	Canola	cytosol	29.26	26.64
CDY18283	Canola	cytosol, nucleus, peroxisome	20.56	23.12
CDY18145	Canola	cytosol	19.81	22.96
CDY12691	Canola	mitochondrion	15.37	22.8
CDX89917	Canola	cytosol	19.63	22.6
CDY50184	Canola	mitochondrion	15.37	22.55
CDX81471	Canola	mitochondrion	15.37	22.55
CDX76760	Canola	cytosol	19.44	22.48
CDY64692	Canola	mitochondrion	15.74	22.43
CDY03862	Canola	mitochondrion	15.74	22.31
CDX93766	Canola	mitochondrion	15.19	22.1
CDX76977	Canola	cytosol	20.74	21.46
CDY57160	Canola	mitochondrion	15.0	21.43
CDY01884	Canola	mitochondrion	14.07	21.29
CDY60368	Canola	mitochondrion	14.81	21.16
CDX96047	Canola	mitochondrion	13.89	20.78
CDY45281	Canola	cytosol	12.96	20.41
CDY41097	Canola	cytosol	12.96	20.35
CDY15531	Canola	cytosol, golgi, nucleus	22.78	20.16
CDY53396	Canola	cytosol	21.67	19.66
CDX86594	Canola	cytosol, golgi, nucleus	22.22	18.46
CDY37444	Canola	nucleus	8.52	16.37
CDX86691	Canola	cytosol, mitochondrion	30.0	16.02

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	GO:A0A078FGR6	UniProt:A0A078FGR6	InterPro:ANTH_dom
EnsemblPlants:CDY12401	ProteinID:CDY12401	ProteinID:CDY12401.1	InterPro:Clathrin_AP_dom2	ncoils:Coil	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00061637001
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF32	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EE04EE	SEG:seg

Description

BnaC08g08040DBnaC08g08040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGR6]

Coordinates

chrLK032021:-:811885..815169

Molecular Weight (calculated)

60865.5 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.424

Length

540 amino acids

Sequence
(BLAST)

001: MSGSQSSLRR YLGAIKDTTT VSLAKVNSGY KELDIAIVKA TNHVERPSKE RYIRAIFMAI SATRPRADVA YCIHALARRL SKTHNWAVAL KTLIVIHRAL
101: REVDQTFHEE VINYSRSRSH MLNMSHFKDD SSPNAWVYST WVRFYALFLE ERLECFRVLK YDVEIDPPRT KELDTPDLLE QLPALQELLF RVLDCQPEGA
201: AVQNHIIQLA LSMVVTESTK IYQALTDGID NLVDKFFEMQ RNDALKALDM YRRAVKQAER LSEFYEVCKS VYVGRGDSFV KIEQPPTSFL QAMEEYVKEA
301: PLAAGAKKEQ AMEKLAAPKE ILAIEYEKPP EVIEEKPVSP EPPVKAEAEA EKPVEKQPDL LSMDDPAPGV SELDEKNALA LAIVPVTVEQ PVSPIDFTNG
401: NSSGWELALV TAPSSNEVAA AKSKLAGGLD KLTLDSLYED AIRVNQQQNR SHNPWEQHHP VHNGPMMHHQ PFFASNGVSA PPPVQMANQY HQPYGFQHQN
501: SGMMMGPVQP YQQQQQQQQN MNPFGNPFVS NGKPFVVHVY

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.