Factsheet for TraesCS6D01G354100.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G370500.1	Wheat	cytosol	95.61	97.25
TraesCS6B01G407500.2	Wheat	cytosol	96.62	96.79
HORVU6Hr1G087330.4	Barley	cytosol	91.72	93.3
Os02t0803300-01	Rice	cytosol	71.79	74.69
KXG31293	Sorghum	cytosol	67.4	72.55
Zm00001d052008_P003	Maize	cytosol	62.67	67.09
TraesCS7D01G140200.1	Wheat	cytosol	59.46	62.41
VIT_11s0016g05900.t01	Wine grape	cytosol	52.03	60.63
GSMUA_Achr6P03060_001	Banana	cytosol	55.91	60.51
GSMUA_Achr5P23570_001	Banana	cytosol	55.57	60.37
CDY41768	Canola	cytosol, mitochondrion	40.54	60.3
Solyc07g007820.2.1	Tomato	cytosol	56.42	59.33
CDY71126	Canola	cytosol, mitochondrion	42.57	59.15
KRH20163	Soybean	cytosol	53.38	57.88
KRH03643	Soybean	mitochondrion	53.38	57.66
AT5G35200.2	Thale cress	cytosol	52.03	56.62
CDY12401	Canola	cytosol, mitochondrion	50.68	55.56
PGSC0003DMT400017184	Potato	cytosol	40.2	55.22
Bra038937.1-P	Field mustard	mitochondrion	51.18	55.09
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	41.72	43.72
TraesCS7D01G414100.1	Wheat	mitochondrion	40.71	42.43
TraesCS3D01G259000.2	Wheat	cytosol	40.2	42.27
TraesCS7D01G476900.2	Wheat	cytosol	41.05	41.97
TraesCS6D01G143700.1	Wheat	cytosol	40.88	41.23
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	25.34	26.79
TraesCS1D01G036500.1	Wheat	cytosol	25.0	23.95
TraesCS1D01G266400.1	Wheat	mitochondrion	26.52	23.72
TraesCS4D01G085400.1	Wheat	mitochondrion	11.32	16.96
TraesCS5D01G304500.1	Wheat	mitochondrion	11.66	15.61

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF29
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS6D01G354100	EnsemblPlants:TraesCS6D01G354100.2	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:449807379..449810785

Molecular Weight (calculated)

65614.6 Da

IEP (calculated)

6.466

GRAVY (calculated)

-0.426

Length

592 amino acids

Sequence
(BLAST)

001: MAGGGTSIRK YVGALKDSTT VSIAKVNSDY KQLDIAIVKA TNHVERPAKE KYIRDIFMHL NSGRARADVA YCIRALARRL SKTRNWAVAL KTLIVIHRAL
101: REVDPSFRDE LISYGRSSGQ MLHMSYFKDD SSPDAWDHSA WIRNYALFLE ERLESFRVLN YDVELDPLGT RDVDTTGLLA QLPALSQLLF RLISCQPHGS
201: SSYNTIIQHA LSMVATESVR IQTAINDGIL NLVDKFFDMH RDDAIRALDI YKKALKQAGQ LSGFYDTCKT IHIGRDEKLL TIEQPPASFL QAMEDYVRDA
301: PLASKNQGIF ICLQAVLAIE YNRKPEEEEV STPPPPPPQV STSEKEPEPE PVTKVVPRVE QIDLLGMDVP TPDTSELDQK NALALAIVEQ DNAPKAAAGS
401: ENVATSWELA LVTAPSASEN VATSRNLAGG LDLLTLDSLY DDAHRHTQQN ASYNPWEQPA PASSAPMMQQ QYQQQPMHNP LYASAQQQQA FMLQQQQAFV
501: LQQQQQYQQM MMMGAPSLHR QASSNPSLHR QASSNPSLHR QASSNPSFHR QASSNPFDRS YVPAAAAGGG GYPYAPAMQL HTGNAYTGTG MM

Best Arabidopsis Sequence Match ( AT1G14910.1 )
(BLAST)

001: MGTLQSWRRA YGALKDTTKV GLVRVNSDYA ELDVAIVKAT NHVECPPKDR HLRKIFLATS AIRPRADVAY CIHALSRRLH KTRNWTVALK ALLVIHRLLR
101: DGDPTFREEL LNFSQKGRIM QISNFKDDSS PVAWDCSGWV RTYALFLEER LECFRVLKYD IEAERLPKVS PGQEKGYSKT RDLDGEKLLE QLPALQQLLH
201: RLIGCKPEGA AKHNHIIQYA LSLVLKESFK VYCAINEGII NLVEKFFEMP RHEAIKALEI YKRAGLQAGN LSAFYEVCKG LELARNFQFP VLREPPQSFL
301: TTMEEYMRDA PQMVDVTSGP LLLTYTPDDG LTSEDVGPSH EEHETSSPSD SAVVPSEETQ LSSQSPPSVE TPQNFIDTDD LLGLHDDTPD PLAILDQNAL
401: ALALVSNDVD SSPFSFGQAR DLDPSGWELA LVTTPSNDIS AATERQLAGG LDTLTLNSLY DDGALRAAQQ PAYGVPASNP FEVQDLFAFS DSVSPPSAVN
501: NPFGLYEPTY HQQEQQPQLQ VAPSPANPFG DFGEFPIVPV SEPQSTTSFG AFPVPVSEPS NTTGFGEIPV VPVTEPPNTT AFGEFPVVPV SEPQNITGFG
601: ALPVTPASEP SNTTGFGEFP VVSVSAPQNT TGFGALPVIP VSEPSKTTGL GEFPVVPVSE PQNTTGFGEF PVNAGAHEQH NSNNPFGSTG FL

Arabidopsis Description

Putative clathrin assembly protein At1g14910 [Source:UniProtKB/Swiss-Prot;Acc:P94017]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.