Factsheet for TraesCS4D01G208100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	99.82	87.62
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	99.64	87.46
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	97.86	84.83
Zm00001d046121_P001	Maize	cytosol	53.21	82.09
Zm00001d030399_P001	Maize	cytosol	51.07	81.71
Os03t0275500-01	Rice	plasma membrane	94.11	80.95
EER92480	Sorghum	cytosol, mitochondrion, plastid	93.21	80.93
Zm00001d047804_P001	Maize	plasma membrane	91.07	80.44
Zm00001d028620_P001	Maize	plasma membrane	91.79	80.44
CDX76976	Canola	cytosol	69.64	65.77
CDY35361	Canola	cytosol	69.29	65.65
CDY11530	Canola	cytosol	67.32	65.0
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	60.89	64.71
CDX68831	Canola	cytosol	67.32	63.79
CDX75232	Canola	cytosol	67.5	63.74
KRH52429	Soybean	endoplasmic reticulum	70.0	61.15
Bra007800.1-P	Field mustard	cytosol	66.79	61.01
PGSC0003DMT400035762	Potato	cytosol	69.11	60.56
Bra011333.1-P	Field mustard	cytosol	67.5	60.29
KRH61760	Soybean	mitochondrion	70.0	60.12
Bra034252.1-P	Field mustard	cytosol	69.46	59.94
Solyc08g059660.1.1	Tomato	cytosol	67.86	59.75
AT2G25430.1	Thale cress	cytosol	69.46	59.57
PGSC0003DMT400040963	Potato	cytosol	68.04	59.44
VIT_04s0008g05540.t01	Wine grape	cytosol	70.36	59.43
CDX76977	Canola	cytosol	54.82	58.81
AT4G32285.2	Thale cress	cytosol	66.25	58.43
VIT_11s0016g05480.t01	Wine grape	cytosol	65.89	58.29
Solyc06g011450.1.1	Tomato	cytosol	63.75	58.14
GSMUA_Achr11P...	Banana	cytosol	46.79	57.46
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	62.86	57.14
CDX76760	Canola	cytosol	47.5	56.96
Solyc07g008060.1.1	Tomato	cytosol	61.61	56.19
KRH20132	Soybean	cytosol	60.36	55.23
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	60.89	53.96
TraesCS1D01G036500.1	Wheat	cytosol	57.86	52.43
KRH05593	Soybean	cytosol	7.32	47.67
TraesCS1D01G266400.1	Wheat	mitochondrion	45.0	38.07
TraesCS7D01G140200.1	Wheat	cytosol	30.89	30.67
TraesCS1D01G375800.1	Wheat	cytosol, mitochondrion, plastid	30.54	30.27
TraesCS3D01G259000.2	Wheat	cytosol	29.64	29.48
TraesCS7D01G414100.1	Wheat	mitochondrion	28.75	28.35
TraesCS7D01G476900.2	Wheat	cytosol	29.11	28.15
TraesCS6D01G143700.1	Wheat	cytosol	28.75	27.43
TraesCS6D01G354100.2	Wheat	cytosol	26.79	25.34
TraesCS4D01G085400.1	Wheat	mitochondrion	14.11	20.0
TraesCS5D01G304500.1	Wheat	mitochondrion	15.36	19.46

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	InterPro:ENTH
InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289
GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:TraesCS4D01G208100	EnsemblPlants:TraesCS4D01G208100.1	TIGR:cd03564
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:358469036..358470952

Molecular Weight (calculated)

61976.2 Da

IEP (calculated)

5.069

GRAVY (calculated)

-0.560

Length

560 amino acids

Sequence
(BLAST)

001: MSSSTIRKAL GAVKDQTSIG LAKVTSNIAP ELDVLIVKTT SHDDEPAEER HIREILHLTS GSRAHVAAAV AGCARRLSRT RDYVVALKSL MLVHRLLTDG
101: DPFFHRELLH ATRRGTRLLN LSDFRDEAHS GSWDHSDDKR PPTPVRDMKP ERVLGRMHHL QQLLDRFLAC RPTGGAKQSR MVLVALYQMA RESFQLYADI
201: CEVLAVLLDR FFDMEYADCV KAFEAYASAA KQIDELCSFY AWCKDTGVAR SSEYPEVQRV TDKLLETLEE FMRDRAKRPK SPPREPEPEP VKEEEPEPDM
301: NSIKALPAPE DYKEPEPEKV EEEVKPEPPP QPQGDLVDLR EDTVSADEQG NRLALALFQG PPAAGGSNGS WEAFPSNGGN EVTSAWQNPA AEPGKADWEL
401: ALVETASNLS KQKAVMTGGM DNLLLNGMYD QGVVRQHVNA QATSGSSSSV ALPAPGQKTQ MLALPAPDGS MQNVGGDPFA ASLTFAPPSY VQMAEMEKKQ
501: QFLTQEQMMW QQYQRDGMQG PSSLAKLDRT YNNGFGSNPA MPYGMPNAPM ANTGYYYPTY

Best Arabidopsis Sequence Match ( AT2G25430.1 )
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Arabidopsis Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.