Factsheet for AT2G25430.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76976	Canola	cytosol	85.15	93.76
CDY35361	Canola	cytosol	84.69	93.57
Bra034252.1-P	Field mustard	cytosol	90.96	91.53
CDY11530	Canola	cytosol	78.25	88.1
CDX76977	Canola	cytosol	70.29	87.93
Bra007800.1-P	Field mustard	cytosol	81.93	87.28
CDX76760	Canola	cytosol	60.64	84.8
AT4G32285.2	Thale cress	cytosol	81.78	84.09
KRH52429	Soybean	endoplasmic reticulum	77.49	78.94
KRH61760	Soybean	mitochondrion	76.88	76.99
VIT_04s0008g05540.t01	Wine grape	cytosol	75.34	74.21
KRH05593	Soybean	cytosol	9.65	73.26
PGSC0003DMT400040963	Potato	cytosol	71.82	73.17
PGSC0003DMT400035762	Potato	cytosol	71.52	73.08
Solyc08g059660.1.1	Tomato	cytosol	70.44	72.33
Solyc06g011450.1.1	Tomato	cytosol	66.77	71.01
TraesCS4D01G208100.1	Wheat	cytosol, mitochondrion, plastid	59.57	69.46
Zm00001d046121_P001	Maize	cytosol	38.28	68.87
Zm00001d030399_P001	Maize	cytosol	36.75	68.57
TraesCS4B01G207200.1	Wheat	cytosol, mitochondrion, plastid	64.32	65.83
Zm00001d047804_P001	Maize	plasma membrane	63.86	65.77
EER92480	Sorghum	cytosol, mitochondrion, plastid	64.93	65.74
Os03t0275500-01	Rice	plasma membrane	65.39	65.59
TraesCS4A01G097200.1	Wheat	cytosol, mitochondrion, plastid	63.86	65.36
GSMUA_Achr9P03950_001	Banana	cytosol, mitochondrion, plastid	52.53	65.09
Zm00001d028620_P001	Maize	plasma membrane	63.55	64.95
HORVU4Hr1G059660.3	Barley	cytosol, mitochondrion, plastid	64.17	64.86
GSMUA_Achr11P...	Banana	cytosol	43.03	61.62
GSMUA_Achr6P33420_001	Banana	cytosol, mitochondrion, plastid	52.37	54.11
Os05t0112101-01	Rice	plasma membrane	47.32	53.18
TraesCS1A01G035100.1	Wheat	cytosol	49.77	52.76
TraesCS1D01G036500.1	Wheat	cytosol	49.62	52.43
TraesCS1B01G044800.1	Wheat	cytosol	49.46	52.27
HORVU1Hr1G005290.1	Barley	cytosol	48.7	51.46
Zm00001d035652_P001	Maize	cytosol	44.26	48.41
EES18894	Sorghum	cytosol	45.64	47.83
AT1G03050.1	Thale cress	cytosol, mitochondrion	41.81	45.58
AT4G02650.1	Thale cress	mitochondrion	41.04	43.86
AT5G57200.1	Thale cress	cytosol	28.48	31.47
AT4G25940.1	Thale cress	cytosol	28.48	30.95
AT2G01600.1	Thale cress	cytosol, mitochondrion	26.49	30.3
AT5G35200.2	Thale cress	cytosol	24.81	29.78
AT1G05020.1	Thale cress	cytosol	28.18	28.18
AT1G25240.2	Thale cress	mitochondrion	14.85	25.73
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	14.4	25.13
AT1G14686.1	Thale cress	cytosol	13.02	25.07
AT1G68110.1	Thale cress	mitochondrion	14.55	25.07
AT1G14910.1	Thale cress	mitochondrion	26.03	24.57
AT2G01920.1	Thale cress	mitochondrion	11.18	23.4

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.4.6	EntrezGene:817081	ProteinID:AAD20703.1	ProteinID:AEC07701.1
InterPro:ANTH_dom	ArrayExpress:AT2G25430	EnsemblPlantsGene:AT2G25430	RefSeq:AT2G25430	TAIR:AT2G25430	RefSeq:AT2G25430-TAIR-G
EnsemblPlants:AT2G25430.1	TAIR:AT2G25430.1	EMBL:AY085092	EMBL:AY139760	Unigene:At.20747	EMBL:BT008299
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0031410	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712
RefSeq:NP_565595.1	PFAM:PF07651	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF13
UniProt:Q8LF20	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00000A2716	SEG:seg

Description

Putative clathrin assembly protein At2g25430 [Source:UniProtKB/Swiss-Prot;Acc:Q8LF20]

Coordinates

chr2:+:10822192..10824939

Molecular Weight (calculated)

72088.0 Da

IEP (calculated)

5.067

GRAVY (calculated)

-0.585

Length

653 amino acids

Sequence
(BLAST)

001: MAPSIRKAIG AVKDQTSIGI AKVASNMAPD LEVAIVKATS HDDDPASEKY IREILNLTSL SRGYILACVT SVSRRLSKTR DWVVALKALM LVHRLLNEGD
101: PIFQEEILYS TRRGTRMLNM SDFRDEAHSS SWDHSAFVRT YAGYLDQRLE LALFERKSGV SVNSGGNSSH HSNNDDRYGR GRDDFRSPPP RSYDYENGGG
201: GGSDFRGDNN GYGGVPKRSR SYGDMTEMGG GGGGGGRDEK KVVTPLREMT PERIFGKMGH LQRLLDRFLS LRPTGLAKNS RMILIALYPV VRESFKLYAD
301: ICEVLAVLLD KFFDMEYSDC VKAFDAYASA AKQIDELIAF YNWCKETGVA RSSEYPEVQR ITSKLLETLE EFVRDRAKRG KSPERKEIEA PPPVVEEEEP
401: EPDMNEIKAL PPPENYTPPP PPEPEPQPEK PQFTEDLVNL REDEVTADDQ GNKFALALFA GPPGNNGKWE AFSSNGVTSA WQNPAAEPGK ADWELALVET
501: TSNLEKQTAA LGGGFDNLLL NGMYDQGMVR QHVSTSQLTG GSASSVALPL PGKTNNQVLA LPAPDGTVEK VNQDPFAASL TIPPPSYVQM AEMEKKQYLL
601: SQEQQLWQQY QRDGMRGQAS LAKMNTGPVP AYGMPPVNGM GPPPTGYYYN NPY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.