Factsheet for AT5G35200.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71126	Canola	cytosol, mitochondrion	71.51	91.31
CDY41768	Canola	cytosol, mitochondrion	65.44	89.45
Bra038937.1-P	Field mustard	mitochondrion	89.71	88.73
CDY12401	Canola	cytosol, mitochondrion	87.68	88.33
VIT_11s0016g05900.t01	Wine grape	cytosol	66.18	70.87
KRH20163	Soybean	cytosol	69.12	68.86
KRH03643	Soybean	mitochondrion	68.75	68.25
Solyc07g007820.2.1	Tomato	cytosol	67.65	65.36
GSMUA_Achr6P03060_001	Banana	cytosol	64.52	64.17
GSMUA_Achr5P23570_001	Banana	cytosol	64.15	64.04
Zm00001d037484_P002	Maize	cytosol, mitochondrion	63.79	62.98
KXG19435	Sorghum	cytosol, mitochondrion	63.6	61.35
TraesCS7A01G138400.1	Wheat	cytosol	62.32	60.11
HORVU7Hr1G028590.1	Barley	cytosol	62.32	60.0
TraesCS7B01G040500.1	Wheat	cytosol	62.13	59.93
TraesCS7D01G140200.1	Wheat	cytosol	61.95	59.75
Os06t0175500-01	Rice	plasma membrane	62.5	59.65
PGSC0003DMT400017184	Potato	cytosol	46.88	59.16
Zm00001d045154_P002	Maize	mitochondrion	63.05	57.36
Os02t0803300-01	Rice	cytosol	59.38	56.77
KXG31293	Sorghum	cytosol	57.17	56.55
Zm00001d052008_P003	Maize	cytosol	55.51	54.61
TraesCS6A01G370500.1	Wheat	cytosol	56.07	52.41
HORVU6Hr1G087330.4	Barley	cytosol	55.88	52.23
TraesCS6B01G407500.2	Wheat	cytosol	56.62	52.12
TraesCS6D01G354100.2	Wheat	cytosol	56.62	52.03
AT2G01600.1	Thale cress	cytosol, mitochondrion	46.69	44.48
AT5G57200.1	Thale cress	cytosol	47.61	43.82
AT4G25940.1	Thale cress	cytosol	47.61	43.09
AT1G14910.1	Thale cress	mitochondrion	46.88	36.85
AT1G03050.1	Thale cress	cytosol, mitochondrion	29.41	26.71
AT4G02650.1	Thale cress	mitochondrion	28.68	25.53
AT2G25430.1	Thale cress	cytosol	29.78	24.81
AT4G32285.2	Thale cress	cytosol	28.86	24.72
AT1G25240.2	Thale cress	mitochondrion	15.81	22.81
AT1G68110.1	Thale cress	mitochondrion	14.52	20.84
AT2G01920.1	Thale cress	mitochondrion	11.95	20.83
AT1G14686.1	Thale cress	cytosol	12.87	20.65
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	13.6	19.79
AT1G05020.1	Thale cress	cytosol	23.71	19.75

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	EntrezGene:833474	ProteinID:AED93944.1	EMBL:AF080121
ProteinID:ANM68678.1	InterPro:ANTH_dom	ArrayExpress:AT5G35200	EnsemblPlantsGene:AT5G35200	RefSeq:AT5G35200	TAIR:AT5G35200
RefSeq:AT5G35200-TAIR-G	EnsemblPlants:AT5G35200.2	EMBL:AY081284	Unigene:At.30612	ProteinID:BAA98205.1	EMBL:BT000375
InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276
GO:GO:0031410	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	RefSeq:NP_001330406.1
RefSeq:NP_198370.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32	UniProt:Q9LHS0
SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI00000AC098	SEG:seg	:

Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]

Coordinates

chr5:-:13462155..13466097

Molecular Weight (calculated)

61182.7 Da

IEP (calculated)

6.044

GRAVY (calculated)

-0.476

Length

544 amino acids

Sequence
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.