CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037484_P002	Maize	cytosol, mitochondrion	94.68	96.91
Zm00001d045154_P002	Maize	mitochondrion	94.68	89.3
HORVU7Hr1G028590.1	Barley	cytosol	85.64	85.49
TraesCS7A01G138400.1	Wheat	cytosol	85.46	85.46
TraesCS7B01G040500.1	Wheat	cytosol	85.28	85.28
TraesCS7D01G140200.1	Wheat	cytosol	85.11	85.11
Os06t0175500-01	Rice	plasma membrane	85.82	84.91
GSMUA_Achr6P03060_001	Banana	cytosol	70.92	73.13
GSMUA_Achr5P23570_001	Banana	cytosol	69.33	71.74
KXG31293	Sorghum	cytosol	68.79	70.55
KRH20163	Soybean	cytosol	68.09	70.33
KRH03643	Soybean	mitochondrion	68.09	70.07
VIT_11s0016g05900.t01	Wine grape	cytosol	62.94	69.88
Solyc07g007820.2.1	Tomato	cytosol	68.44	68.56
CDY71126	Canola	cytosol, mitochondrion	51.06	67.61
CDY41768	Canola	cytosol, mitochondrion	47.7	67.59
PGSC0003DMT400017184	Potato	cytosol	49.65	64.97
AT5G35200.2	Thale cress	cytosol	61.35	63.6
CDY12401	Canola	cytosol, mitochondrion	60.46	63.15
Bra038937.1-P	Field mustard	mitochondrion	61.17	62.73
EES19899	Sorghum	cytosol, mitochondrion, plastid	49.29	49.29
KXG20765	Sorghum	mitochondrion	48.23	47.89
EES01312	Sorghum	cytosol	47.52	47.6
EES06356	Sorghum	cytosol	46.28	45.79
KXG20534	Sorghum	cytosol, mitochondrion	46.63	45.34
EES18258	Sorghum	cytosol	30.5	27.61
EER92480	Sorghum	cytosol, mitochondrion, plastid	31.21	27.29
EES18894	Sorghum	cytosol	27.3	24.72
KXG33814	Sorghum	cytosol, mitochondrion	23.76	23.55
EES13983	Sorghum	mitochondrion	15.96	22.39
EER96828	Sorghum	mitochondrion	15.6	21.89
EES08262	Sorghum	mitochondrion, plastid	12.94	16.7

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:35.1	UniProt:A0A194YHI6	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	ProteinID:KXG19434.1	EnsemblPlants:KXG19435	ProteinID:KXG19435
ProteinID:KXG19435.1	ProteinID:OQU75940.1	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF32
SMART:SM00273	EnsemblPlantsGene:SORBI_3010G059000	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001C80501	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:4627442..4633890

Molecular Weight (calculated)

62189.1 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.328

Length

564 amino acids

Sequence
(BLAST)

001: MAVGGTQPVL RKYLGALKDT TTVSLAKVNS DYKELDIAIV KATNHVERPS KEKYIREIFH SISAARPRAD VAYCIHALAR RLSKTRNWAV ALKTLIVIHR
101: ALREVDPTFR EELINYGRSR SHMLNMAYFK DDSSAEAWDY SAWVRIYALY LEERLECFRV LKYDVETDPP RTKDLDTVAL LDHLPPLQQL LFRLLACQPQ
201: GASSYNVIIQ HALSMVALES VKIYTAISDG TINLVDKFFE MQRNDAVRAL DVYKRATNQA ERLSEFYEVC KTIHIGRGEK FQKIEQPPAS FLQTMEEYVR
301: DAPTGQKEKA VLAIEYKKEP EEEEKPASPP PAPEPEPEQE PEPEPEPVKE EAPEAEPDLL GLNEPNPAAT AIEEQNALAL AIVPIDDVPK AAPTFENGVT
401: GWELALVTAP SSNETAVAPS KKLAGGLDLL TLDSLYDEAN RRASQPAASY NPWDATPATA APVPMLTMAP AMHDPFYASN GYAAPHGVQM AAMAQQQQAF
501: MLQQQMMTMA PAPAPVVHHP MQMQQNPANP FGNPFAAAGA HPYGAAAAGM PLHAGPGNVY TGLI

Best Arabidopsis Sequence Match ( AT5G35200.1 )
(BLAST)

001: MSGGGGSQSS LRRYLGAIKD TTTVSLAKVN SDYKELDIAI VKATNHVERP SKERYIRAIF MAISATRPRA DVAYCIHALA RRLSRTHNWA VALKTLIVIH
101: RALREVDQTF HEEVINYSRS RSHMLNMSHF KDDSGPNAWA YSAWVRFYAL FLEERLECFR VLKYDVEVDP PRTKDLDTPD LLEQLPALQE LLFRVLDCQP
201: EGAAVQNHII QLALSMVISE STKIYQALTD GIDNLVDKFF DMQRNDAVKA LDMYRRAVKQ AGRLSEFFEV CKSVNVGRGE RFIKIEQPPT SFLQAMEEYV
301: KEAPLAAGVK KEQVVEKLTA PKEILAIEYE IPPKVVEEKP ASPEPVKAEA EKPVEKQPDL LSMDDPAPMV SELEEKNALA LAIVPVSVEQ PHSTTDFTNG
401: NSTGWELALV TAPSSNEGAA ADSKLAGGLD KLTLDSLYED AIRVSQQQNR SYNPWEQNPV HNGHMMHQPF YASNGVAAPQ PFQMANQNHQ TFGYQHQNAG
501: MMMGPVQQPY QQQQQNMNNP FGNPFVSNGN PQQPQGYNPY PRYM

Arabidopsis Description

Putative clathrin assembly protein At5g35200 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.