CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010228_P001	Maize	cytosol	86.2	87.32
HORVU1Hr1G065590.1	Barley	cytosol	71.43	73.43
HORVU0Hr1G000720.3	Barley	cytosol	70.95	72.94
TraesCS1B01G277200.1	Wheat	cytosol	69.02	71.07
TraesCS1A01G266200.1	Wheat	cytosol	68.7	70.74
Os05t0426100-00	Rice	cytosol	70.47	65.92
TraesCS1D01G266400.1	Wheat	mitochondrion	68.7	64.65
GSMUA_Achr10P...	Banana	mitochondrion	44.46	54.85
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	46.07	54.05
GSMUA_Achr11P...	Banana	cytosol	44.94	53.85
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	47.99	51.37
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	46.55	49.83
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	46.23	49.57
KXG33814	Sorghum	cytosol, mitochondrion	45.26	49.56
KRH10492	Soybean	cytosol, mitochondrion	47.35	49.5
KRH43936	Soybean	cytosol, mitochondrion	46.87	49.24
CDY15448	Canola	mitochondrion	44.78	48.78
KRH58332	Soybean	mitochondrion	45.75	48.72
CDY32494	Canola	mitochondrion	44.46	48.43
AT1G03050.1	Thale cress	cytosol, mitochondrion	46.07	47.91
Bra032561.1-P	Field mustard	mitochondrion	45.91	47.91
Bra030518.1-P	Field mustard	mitochondrion	45.26	47.8
PGSC0003DMT400059062	Potato	cytosol	44.78	46.81
Bra036250.1-P	Field mustard	mitochondrion	45.1	46.76
CDY21904	Canola	mitochondrion	44.78	46.58
CDY22070	Canola	mitochondrion	44.94	46.51
AT4G02650.1	Thale cress	mitochondrion	45.1	45.99
Solyc11g044860.1.1	Tomato	cytosol	35.15	43.8
CDY18145	Canola	cytosol	32.26	43.13
Bra033369.1-P	Field mustard	cytosol	32.42	43.07
CDX89917	Canola	cytosol	32.26	42.86
EER92480	Sorghum	cytosol, mitochondrion, plastid	43.34	41.86
CDY37444	Canola	nucleus	16.85	37.37
EES18894	Sorghum	cytosol	35.47	35.47
KXG19435	Sorghum	cytosol, mitochondrion	27.61	30.5
EES19899	Sorghum	cytosol, mitochondrion, plastid	26.48	29.26
KXG20765	Sorghum	mitochondrion	26.65	29.23
EES06356	Sorghum	cytosol	26.65	29.12
KXG20534	Sorghum	cytosol, mitochondrion	26.81	28.79
KXG31293	Sorghum	cytosol	25.04	28.36
EES01312	Sorghum	cytosol	25.2	27.89
CDX86691	Canola	cytosol, mitochondrion	45.1	27.79
EES13983	Sorghum	mitochondrion	14.45	22.39
EES08262	Sorghum	mitochondrion, plastid	13.48	19.22
EER96828	Sorghum	mitochondrion	12.2	18.91

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:8058476	InterPro:ANTH_dom	UniProt:C5YY80
InterPro:Clathrin_AP_dom2	EnsemblPlants:EES18258	ProteinID:EES18258	ProteinID:EES18258.1	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987
GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273
EnsemblPlantsGene:SORBI_3009G143600	SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0001A8878C	RefSeq:XP_002439828.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:50098052..50100231

Molecular Weight (calculated)

67476.5 Da

IEP (calculated)

4.540

GRAVY (calculated)

-0.314

Length

623 amino acids

Sequence
(BLAST)

001: MAPSKLRQAL GAVKDQTSIG LAKVGSGGAL ESDLDVAIVK ATRHSESFPA DERHIREIIT LTCLSRVYVG SCVSSLSRRL GRTRSWAVAL KTLVIVHRLL
101: ADGDPAFEQE VFFATRRGTR MLNMSDFCDR SRADAWDFSA FVRTYAAYLD DRLECRMQGR QQGGGGGGAA AARGGGRPLY EEMYASPGNR YICDAASFNG
201: RQEDAEADAE AAHSRAAVAL VTRDPPTSEM TVDQLLVKAN QLHHLLDRFI ACRPVGAAKA NRVVTVSLYP LVKESVQLYC ELTEVMATLI EQFAEMETAD
301: CERVHALFCG LAKQLEELEN FYAWCKVVCV CRQSDVPEVE VVTQKKLELM DEFIRDRHAA ADSQQRLPPP EPEPMESPEP APVEEEEEDD DDMNATKALP
401: APEEPPAAEQ VEPEAPLVVA DPVEEEADFL NLKADAMSGE EHGQQLALAL FDGDIAGSAP KGNVFQGTSA DWETELVQSA SALANQRAEL GGGLSMMVLD
501: GMYNHAAVAS NAQTFSGSAS SVALRPPGAP PMLALPAPPA GGSSAAVGAD PFAASALVPP PTYVQMSDMQ TKQQLLTQEQ QMWRQYGNNG MNQGALAMLQ
601: QRPNQNQQFL PHTGHNYSGY RTS

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.