Factsheet for Solyc01g104870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	95.7	95.53
Solyc11g044860.1.1	Tomato	cytosol	58.0	67.4
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	61.96	61.86
KRH58332	Soybean	mitochondrion	60.93	60.51
KRH43936	Soybean	cytosol, mitochondrion	60.07	58.85
CDY32494	Canola	mitochondrion	57.83	58.74
CDY15448	Canola	mitochondrion	57.66	58.57
KRH10492	Soybean	cytosol, mitochondrion	60.07	58.56
Bra032561.1-P	Field mustard	mitochondrion	59.21	57.62
Bra030518.1-P	Field mustard	mitochondrion	58.35	57.46
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	52.15	57.06
AT1G03050.1	Thale cress	cytosol, mitochondrion	58.52	56.76
GSMUA_Achr10P...	Banana	mitochondrion	48.19	55.45
AT4G02650.1	Thale cress	mitochondrion	58.0	55.16
CDY21904	Canola	mitochondrion	56.45	54.76
CDY22070	Canola	mitochondrion	56.45	54.49
GSMUA_Achr11P...	Banana	cytosol	48.71	54.42
Bra036250.1-P	Field mustard	mitochondrion	56.28	54.41
CDX89917	Canola	cytosol	42.86	53.09
CDY18145	Canola	cytosol	42.51	53.0
Bra033369.1-P	Field mustard	cytosol	42.69	52.88
CDY37444	Canola	nucleus	23.75	49.11
EES18258	Sorghum	cytosol	49.57	46.23
HORVU1Hr1G065590.1	Barley	cytosol	47.68	45.71
HORVU0Hr1G000720.3	Barley	cytosol	47.33	45.38
Zm00001d010228_P001	Maize	cytosol	48.02	45.37
TraesCS1A01G266200.1	Wheat	cytosol	47.16	45.29
TraesCS1B01G277200.1	Wheat	cytosol	46.64	44.79
Solyc08g059660.1.1	Tomato	cytosol	48.19	44.03
Solyc07g008060.1.1	Tomato	cytosol	46.47	43.97
Os05t0426100-00	Rice	cytosol	49.74	43.39
Os01t0881100-01	Rice	mitochondrion	37.87	42.23
Solyc06g011450.1.1	Tomato	cytosol	44.06	41.69
TraesCS1D01G266400.1	Wheat	mitochondrion	46.64	40.94
KXG33814	Sorghum	cytosol, mitochondrion	39.93	40.77
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.04	39.82
Solyc12g017440.1.1	Tomato	cytosol	18.93	36.79
CDX86691	Canola	cytosol, mitochondrion	58.18	33.43
Solyc02g043810.2.1	Tomato	cytosol	30.12	30.28
Solyc04g007860.2.1	Tomato	cytosol, plastid	29.26	30.2
Solyc07g007820.2.1	Tomato	cytosol	28.06	28.95
Zm00001d047867_P001	Maize	cytosol	14.46	25.53
Solyc12g006000.1.1	Tomato	cytosol	31.15	24.86
Solyc12g010530.1.1	Tomato	cytosol	24.78	24.24
Solyc12g017430.1.1	Tomato	nucleus	8.78	24.06
Solyc07g049380.1.1	Tomato	cytosol	29.78	23.28
Solyc01g005070.2.1	Tomato	mitochondrion	15.32	22.36
Solyc01g005170.1.1	Tomato	cytosol, mitochondrion, plastid	15.49	21.74
Solyc04g008350.1.1	Tomato	mitochondrion	14.63	21.63

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2	ncoils:Coil
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:K4B259	PFAM:PF07651	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009	EnsemblPlantsGene:Solyc01g104870.2
EnsemblPlants:Solyc01g104870.2.1	UniParc:UPI0002768B8D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:93189554..93191888

Molecular Weight (calculated)

65149.0 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.481

Length

581 amino acids

Sequence
(BLAST)

001: MGSSKLRQAI GAVKDQTSIS LAKVGSSASL SDLEVAIVKA TRHDEYPPEE RHIREILSLT SYSRAYVGAC VNFLSRRLSK TKNWVVALKA LMLIHRLLCD
101: GDPSYEEEIF FATRRGTRLL NMSDFRDSRS NSWDCSAFVR SYALYLDEHL EFRMQNRRGK RSAFAYNDDE EEVRHNARGI KATPLREMKN DRIFSRIHHL
201: MQLLERFLAC RPAGSAKNSR VVIAALYALV KESFQLYYDL TEITTLLFDK FIELSIPDSV KVLEIFFRIN KQFEEIEQFY DWSKTVGVTR TTEYPDIEII
301: PPKKLERMDD LIREKSFKEQ TRKAMRNEPT AEHVRETKTP EPKTEPEEDI NAIKALPAPE VSPEEKTEEQ EEKAVKTQDE GDLLNLSEDV PTSEEHGDQL
401: ALALFDGGQA TTNPATSISP WQAFNDSGDW ETALVQSASH LSNQKTSLPG GFDTLMLNGM YQQGTVSQAV ACSGVVATGS ASSVALGSAG RPAMLALPAP
501: PTANSGANTP APGTDPFAAS LAIAPPAYVQ MSEMEKKQRL LMEEQFMWQE YQKNGMQGQV GFANVQTNPY PYNVGGYRQT F

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.