Factsheet for AT1G03050.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18145	Canola	cytosol	68.95	88.63
CDY32494	Canola	mitochondrion	83.97	87.94
CDX89917	Canola	cytosol	68.78	87.85
Bra030518.1-P	Field mustard	mitochondrion	86.48	87.8
CDY15448	Canola	mitochondrion	83.81	87.76
Bra033369.1-P	Field mustard	cytosol	68.61	87.63
Bra032561.1-P	Field mustard	mitochondrion	87.31	87.6
CDY37444	Canola	nucleus	38.9	82.92
AT4G02650.1	Thale cress	mitochondrion	74.79	73.32
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	60.93	62.71
KRH43936	Soybean	cytosol, mitochondrion	59.77	60.37
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	53.09	59.89
KRH10492	Soybean	cytosol, mitochondrion	58.93	59.23
KRH58332	Soybean	mitochondrion	57.26	58.63
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	56.93	58.59
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	56.76	58.52
GSMUA_Achr11P...	Banana	cytosol	49.25	56.73
GSMUA_Achr10P...	Banana	mitochondrion	46.91	55.64
PGSC0003DMT400059062	Potato	cytosol	54.42	54.7
Solyc11g044860.1.1	Tomato	cytosol	44.91	53.8
CDX86691	Canola	cytosol, mitochondrion	85.31	50.54
EES18258	Sorghum	cytosol	47.91	46.07
TraesCS1A01G266200.1	Wheat	cytosol	46.24	45.79
HORVU1Hr1G065590.1	Barley	cytosol	46.24	45.71
HORVU0Hr1G000720.3	Barley	cytosol	46.08	45.54
TraesCS1B01G277200.1	Wheat	cytosol	45.91	45.45
Zm00001d010228_P001	Maize	cytosol	45.91	44.72
Os01t0881100-01	Rice	mitochondrion	38.23	43.95
Os05t0426100-00	Rice	cytosol	48.58	43.69
TraesCS1D01G266400.1	Wheat	mitochondrion	46.74	42.3
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	39.07	42.16
KXG33814	Sorghum	cytosol, mitochondrion	39.9	42.0
AT2G25430.1	Thale cress	cytosol	45.58	41.81
AT4G32285.2	Thale cress	cytosol	44.24	41.73
Zm00001d047867_P001	Maize	cytosol	17.03	31.0
AT2G01600.1	Thale cress	cytosol, mitochondrion	28.21	29.6
AT5G35200.2	Thale cress	cytosol	26.71	29.41
AT5G57200.1	Thale cress	cytosol	27.71	28.09
AT4G25940.1	Thale cress	cytosol	26.38	26.29
AT1G05020.1	Thale cress	cytosol	27.05	24.81
AT1G68110.1	Thale cress	mitochondrion	15.36	24.27
AT1G14910.1	Thale cress	mitochondrion	27.71	23.99
AT1G33340.1	Thale cress	cytosol, mitochondrion, nucleus	14.52	23.26
AT1G25240.2	Thale cress	mitochondrion	14.52	23.08
AT1G14686.1	Thale cress	cytosol	12.85	22.71
AT2G01920.1	Thale cress	mitochondrion	10.85	20.83

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.2	EntrezGene:839416	ProteinID:AAD25804.1	ProteinID:AEE27520.1
InterPro:ANTH_dom	ArrayExpress:AT1G03050	EnsemblPlantsGene:AT1G03050	RefSeq:AT1G03050	TAIR:AT1G03050	RefSeq:AT1G03050-TAIR-G
EnsemblPlants:AT1G03050.1	TAIR:AT1G03050.1	InterPro:Clathrin_AP_dom2	EMBL:DQ446223	InterPro:ENTH	InterPro:ENTH_VHS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005905	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0031410	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	RefSeq:NP_171804.1	PFAM:PF07651	PO:PO:0001016	PO:PO:0001017	PO:PO:0001185
PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50942
PANTHER:PTHR22951	PANTHER:PTHR22951:SF12	UniProt:Q9SA65	SMART:SM00273	SUPFAM:SSF48464	SUPFAM:SSF89009
UniParc:UPI000009DBAE	SEG:seg	:	:	:	:

Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]

Coordinates

chr1:+:707485..710041

Molecular Weight (calculated)

66974.8 Da

IEP (calculated)

4.565

GRAVY (calculated)

-0.524

Length

599 amino acids

Sequence
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.