CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15448	Canola	mitochondrion	53.41	94.41
CDY32494	Canola	mitochondrion	48.86	86.36
AT1G03050.1	Thale cress	cytosol, mitochondrion	50.54	85.31
CDY18145	Canola	cytosol	39.27	85.19
CDX89917	Canola	cytosol	39.47	85.07
CDY37444	Canola	nucleus	21.56	77.58
CDY22070	Canola	mitochondrion	40.36	67.77
CDY21904	Canola	mitochondrion	40.06	67.61
VIT_12s0055g00790.t01	Wine grape	cytosol, mitochondrion	35.51	61.68
KRH43936	Soybean	cytosol, mitochondrion	35.21	60.03
KRH10492	Soybean	cytosol, mitochondrion	34.62	58.72
Solyc01g104870.2.1	Tomato	cytosol, mitochondrion	33.43	58.18
KRH58332	Soybean	mitochondrion	33.63	58.12
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	33.23	57.73
GSMUA_Achr6P18600_001	Banana	cytosol, mitochondrion	30.17	57.44
PGSC0003DMT400059062	Potato	cytosol	31.95	54.19
GSMUA_Achr10P...	Banana	mitochondrion	26.81	53.66
GSMUA_Achr11P...	Banana	cytosol	27.6	53.65
Solyc11g044860.1.1	Tomato	cytosol	26.01	52.6
EES18258	Sorghum	cytosol	27.79	45.1
HORVU1Hr1G065590.1	Barley	cytosol	27.0	45.05
HORVU0Hr1G000720.3	Barley	cytosol	26.81	44.72
CDY35361	Canola	cytosol	26.11	44.67
CDX76976	Canola	cytosol	26.11	44.52
CDY11530	Canola	cytosol	25.52	44.48
TraesCS1B01G277200.1	Wheat	cytosol	26.61	44.46
TraesCS1A01G266200.1	Wheat	cytosol	26.61	44.46
Zm00001d010228_P001	Maize	cytosol	26.71	43.9
CDX68831	Canola	cytosol	25.22	43.15
CDX75232	Canola	cytosol	25.12	42.83
Os01t0881100-01	Rice	mitochondrion	22.06	42.8
Os05t0426100-00	Rice	cytosol	27.99	42.49
KXG33814	Sorghum	cytosol, mitochondrion	23.15	41.12
TraesCS1D01G266400.1	Wheat	mitochondrion	26.9	41.09
Zm00001d012220_P001	Maize	cytosol, mitochondrion, nucleus, plastid	22.55	41.08
CDX76760	Canola	cytosol	17.21	37.26
CDX76977	Canola	cytosol	18.79	36.4
CDY42239	Canola	cytosol	11.67	35.01
CDY41768	Canola	cytosol, mitochondrion	13.65	34.67
CDY71126	Canola	cytosol, mitochondrion	14.14	33.57
Zm00001d047867_P001	Maize	cytosol	9.79	30.09
CDY12401	Canola	cytosol, mitochondrion	16.02	30.0
CDY04095	Canola	cytosol	16.82	29.77
CDY17660	Canola	cytosol	16.62	29.42
CDY17459	Canola	cytosol	16.52	29.3
CDY18283	Canola	cytosol, nucleus, peroxisome	13.85	29.17
CDY36239	Canola	cytosol	16.42	29.07
CDY52732	Canola	cytosol	16.82	29.06
CDY09433	Canola	cytosol, mitochondrion	16.52	28.94
CDY48813	Canola	cytosol	16.62	28.82
CDY38276	Canola	cytosol	16.82	28.72
CDY47927	Canola	cytosol	14.14	28.32
CDX89382	Canola	cytosol	15.63	26.29
CDX94400	Canola	cytosol	15.43	26.17
CDY15531	Canola	cytosol, golgi, nucleus	15.73	26.07
CDY53396	Canola	cytosol	15.23	25.88
CDY12691	Canola	mitochondrion	9.1	25.27
CDX81471	Canola	mitochondrion	9.2	25.27
CDY01884	Canola	mitochondrion	8.8	24.93
CDY45299	Canola	mitochondrion	16.52	24.27
CDY53525	Canola	cytosol, mitochondrion	16.72	24.25
CDX96047	Canola	mitochondrion	8.61	24.1
CDY64692	Canola	mitochondrion	9.0	24.01
CDX93766	Canola	mitochondrion	8.8	23.99
CDY50184	Canola	mitochondrion	8.7	23.91
CDX86594	Canola	cytosol, golgi, nucleus	15.33	23.85
CDY03862	Canola	mitochondrion	8.8	23.36
CDY41097	Canola	cytosol	7.81	22.97
CDY60368	Canola	mitochondrion	8.51	22.75
CDY45281	Canola	cytosol	7.72	22.74
CDY57160	Canola	mitochondrion	8.41	22.49

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:16.6.7.1.2	Gene3D:2.130.10.10	MapMan:22.1.6.2	GO:A0A078DBQ6
InterPro:ANTH_dom	EnsemblPlants:CDX86691	ProteinID:CDX86691	ProteinID:CDX86691.1	InterPro:Clathrin_AP_dom2	ncoils:Coil
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0036265	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00145376001	InterPro:IPR001680	InterPro:IPR008942
InterPro:IPR013809	InterPro:IPR014712	InterPro:IPR015943	InterPro:IPR017986	HAMAP:MF_03056	PFAM:PF00400
PFAM:PF07651	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PFscan:PS50942	PANTHER:PTHR22951
PANTHER:PTHR22951:SF12	SMART:SM00273	SMART:SM00320	SUPFAM:SSF48464	SUPFAM:SSF50978	SUPFAM:SSF89009
InterPro:Trm82	UniPathway:UPA00989	UniParc:UPI0004EEB6DE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g00120D

Coordinates

chrLK031846:-:1687473..1692039

Molecular Weight (calculated)

111657.0 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.315

Length

1011 amino acids

Sequence
(BLAST)

0001: MGSSKLKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEYPAE EKYIREILSL TSYSRNYINA CVNTLSKRLN KTKCWTVALK TLILIQRLLA
0101: EGDKAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDCSAF VRTYALYLDE RLDYRMQTRH GKRGVYCVGG DAVEDKKDNS EADLSTAIVV RSQPIAEMKT
0201: EQIFTRIQHL QQLLDRFLAC RPTESARNNR VVIVALYPIA KESFKIYYDV TEIMGVLIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
0301: SSEYPEIEKI TQTKLDLMDE FIRDKSSLEE TKQSNSVEAD EDDDDERTEE VNEEQEDMNA IKALPAPPPK EEKREEEAKE EEVVTEEKKE EEEVGDLLDL
0401: GDNVVAGGAG GDSLALALFD GPYTSGSGSA SGPGWEAFDD DSADWETALV QSATNLSGQK TELGGGFDML LLNGMYQHGT VNAAVQASTA YGAGGSASSV
0501: AFGSAGRPAA TMLALPAPAT ANGSSNGPVP MDPFAASLVV APPHYVQMND MKKKQRMLME EQMMWDQYSR GVCVTMEESH IEEEGERQTK HEVAPALISV
0601: HPFQKSVAVT VGSALRVFDL IEGRPVSLVD ESDGPSHKDS IRAIRYGSSG KLFASAGDDK LVKIWSADSW PWQCRNTISS EKRVTAVAIS SDDSYVCYAD
0701: KFGVVWVVNL DGINEGKVLP SKKGVQLLCH YCSIITSLEF SPDGRYILSA DRDFKIRVTV FPKKPLQGAH EIQSFCLGHT EFVTCITFVQ NSELTQGYLM
0801: SGSGDSSVRL WDITSGSLLD TCDVSPTVKH LESNESEPTQ VTVTDISALP NSSLAAVSIQ RQVCFVLACI RFQGIVLLHC DLSAHTLSIT KVIKIPGDSF
0901: IPTSISFSTS TRLLWMVSGA SNGSNHPGYT RVRLISPIEA EPSSVLEDEQ VPGGTTLLEH LQGKVSIEES VMSAAAEAVR AAMCSLMVKK QYSEENREFR
1001: KNNRNDKKPT Q

Best Arabidopsis Sequence Match ( AT1G03050.1 )
(BLAST)

001: MGSSKFKRAI GAVKDQTSVG LAKVNGRSAS LSELDVAIVK ATRHEEFPAE EKYIREILSL TSYSRSYINA CVSTLSRRLN KTKCWTVALK TLILIQRLLG
101: EGDQAYEQEI FFATRRGTRL LNMSDFRDVS RSNSWDYSAF VRTYALYLDE RLDFRMQARH GKRGVYCVGG EADEEEQDQA AADLSTAIVV RSQPIAEMKT
201: EQIFIRIQHL QQLLDRFLAC RPTGNARNNR VVIVALYPIV KESFQIYYDV TEIMGILIER FMELDIPDSI KVYDIFCRVS KQFEELDQFY SWCKNMGIAR
301: SSEYPEIEKI TQKKLDLMDE FIRDKSALEH TKQSKSVKSE ADEDDDEART EEVNEEQEDM NAIKALPEPP PKEEDDVKPE EEAKEEVIIE KKQEEMGDLL
401: DLGNTNGGEA GQAGDSLALA LFDGPYASGS GSESGPGWEA FKDDSADWET ALVQTATNLS GQKSELGGGF DMLLLNGMYQ HGAVNAAVKT STAYGASGSA
501: SSMAFGSAGR PAATMLALPA PSTANGNAGN INSPVPMDPF AASLEVAPPA YVQMNDMEKK QRMLMEEQMM WDQYSRDGRQ GHMNLRQNQN QPYSYTPQY

Arabidopsis Description

Putative clathrin assembly protein At1g03050 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA65]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.