CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71211
CDX92339
CDY26951
CDY48221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	CDX71211	AT2G15270.1	21798944
AT1G05020.1	CDY48221	AT2G15270.1	21798944
AT1G05020.1	CDX92339	AT5G22780.1	15054111
AT1G05020.1	CDY26951	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15531	Canola	cytosol, golgi, nucleus	87.54	93.28
CDY18283	Canola	cytosol, nucleus, peroxisome	58.31	78.96
CDY53396	Canola	cytosol	68.0	74.29
AT1G05020.1	Thale cress	cytosol	73.69	73.35
VIT_12s0059g01330.t01	Wine grape	cytosol	43.54	47.88
PGSC0003DMT400036091	Potato	cytosol	46.77	41.87
Solyc12g006000.1.1	Tomato	cytosol	46.77	41.76
Solyc07g049380.1.1	Tomato	cytosol	45.23	39.57
PGSC0003DMT400001773	Potato	nucleus	44.77	38.65
KRH17907	Soybean	cytosol	40.92	36.44
GSMUA_Achr2P18700_001	Banana	cytosol	27.85	36.13
GSMUA_Achr7P02300_001	Banana	plastid	26.92	34.65
CDY42239	Canola	cytosol	16.46	31.75
CDY11530	Canola	cytosol	27.08	30.34
CDX76976	Canola	cytosol	27.23	29.85
CDX75232	Canola	cytosol	27.23	29.85
CDY35361	Canola	cytosol	27.08	29.78
CDX68831	Canola	cytosol	26.92	29.61
CDY41768	Canola	cytosol, mitochondrion	17.23	28.14
CDY71126	Canola	cytosol, mitochondrion	17.85	27.23
CDY15448	Canola	mitochondrion	23.69	26.92
CDY32494	Canola	mitochondrion	22.92	26.05
CDY21904	Canola	mitochondrion	24.0	26.04
CDY22070	Canola	mitochondrion	23.85	25.75
CDY12691	Canola	mitochondrion	13.69	24.45
CDY03862	Canola	mitochondrion	14.31	24.41
CDY47927	Canola	cytosol	18.92	24.36
CDY64692	Canola	mitochondrion	14.15	24.27
CDX81471	Canola	mitochondrion	13.69	24.18
CDY17660	Canola	cytosol	20.92	23.82
CDY36239	Canola	cytosol	20.77	23.64
CDY45281	Canola	cytosol	12.46	23.62
CDY60368	Canola	mitochondrion	13.69	23.55
CDX76760	Canola	cytosol	16.77	23.34
CDY57160	Canola	mitochondrion	13.54	23.28
CDY41097	Canola	cytosol	12.31	23.26
CDY09433	Canola	cytosol, mitochondrion	20.62	23.22
CDY17459	Canola	cytosol	20.15	22.98
CDY04095	Canola	cytosol	20.15	22.94
CDY01884	Canola	mitochondrion	12.46	22.69
CDY48813	Canola	cytosol	20.31	22.64
CDX93766	Canola	mitochondrion	12.92	22.64
CDX76977	Canola	cytosol	18.15	22.61
CDY50184	Canola	mitochondrion	12.77	22.55
CDY12401	Canola	cytosol, mitochondrion	18.46	22.22
CDX96047	Canola	mitochondrion	12.31	22.16
CDX89917	Canola	cytosol	15.69	21.75
CDY18145	Canola	cytosol	15.38	21.46
CDY52732	Canola	cytosol	19.08	21.2
CDY38276	Canola	cytosol	19.08	20.95
CDX89382	Canola	cytosol	18.31	19.8
CDX94400	Canola	cytosol	18.15	19.8
CDY53525	Canola	cytosol, mitochondrion	19.85	18.51
CDY45299	Canola	mitochondrion	19.38	18.31
CDX86691	Canola	cytosol, mitochondrion	23.85	15.33
CDY37444	Canola	nucleus	3.54	8.19

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.1	GO:A0A078DE23	InterPro:ANTH_dom	EnsemblPlants:CDX86594
ProteinID:CDX86594	ProteinID:CDX86594.1	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043
GO:GO:0030136	GO:GO:0030276	GO:GO:0048268	EnsemblPlantsGene:GSBRNA2T00145240001	InterPro:IPR008942	InterPro:IPR013809
InterPro:IPR014712	PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI0004EED008	SEG:seg	:	:

Description

BnaC08g01090D

Coordinates

chrLK031846:+:986404..988536

Molecular Weight (calculated)

71560.0 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.550

Length

650 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVTNGANRG RGGDLTTLEV AILKATSHDE DVPIDDRLVS DILSIISSKK SHAAACAAAI GRRIGRTRSW IVALKSLVLV
101: LRIFQDGDPY FPREVLHGMK RGAKILNLST FRDDSNSRPW DYTAFVRTYA LYLDERLDCF LTGKLQRRYT TNNKNQTGIR SRFNPRIRNK TDEPAVRDMK
201: PATLLDKITY WQRLLDRAIA TRPTGDAKAN RLVKTSLYAV AQESFDLYRD ISDGLALLLD SFFHLPYKSC IHAFQASVRA SKQFEELIGF YELCKASGVG
301: RTSEYPSVQK ISIELLETLQ EFLKDQSSFP GNNAGMYPSP NSLLLPPPPS TVSNSLSERC CSDYGSFRSA SLEDAGTSSP SMSCRSEPYG GGGGREDPNG
401: NSFDTVSTKS LPNTPSSVTL KMLDDKERKK KKQEEASDPW EALMLRDEPR KNIETIPEEP STSENQRDSG NWLLALEETV TTQVEDANSM AIVPFGLDDP
501: VPFQATMDQH NPFMVEPAAP LAKVGTSGEL MSTAFNALAL TEFQGNVPDD FVPSSAPTFK ATGSLPDKCE PFATFESFGF GESVSENGGE KSELYNNCIT
601: PSPSRSGSKA LSNDKPDVRK EMTETEKPES DSKQLNSSQR KEISENSSSP

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.