Factsheet for PGSC0003DMT400036091

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066221

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	PGSC0003DMT400066221	AT2G15270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006000.1.1	Tomato	cytosol	97.25	96.98
PGSC0003DMT400001773	Potato	nucleus	62.53	60.29
VIT_12s0059g01330.t01	Wine grape	cytosol	48.48	59.56
CDY18283	Canola	cytosol, nucleus, peroxisome	38.29	57.92
CDY53396	Canola	cytosol	44.08	53.78
AT1G05020.1	Thale cress	cytosol	47.38	52.68
CDY15531	Canola	cytosol, golgi, nucleus	44.08	52.46
Bra015381.1-P	Field mustard	cytosol	45.45	51.81
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	42.01	47.29
CDX86594	Canola	cytosol, golgi, nucleus	41.87	46.77
KRH17907	Soybean	cytosol	42.42	42.19
GSMUA_Achr2P18700_001	Banana	cytosol	26.72	38.72
GSMUA_Achr7P02300_001	Banana	plastid	24.52	35.25
PGSC0003DMT400040963	Potato	cytosol	27.69	31.36
PGSC0003DMT400076552	Potato	cytosol, mitochondrion	24.66	30.76
PGSC0003DMT400035762	Potato	cytosol	26.72	30.36
PGSC0003DMT400079380	Potato	cytosol, mitochondrion, plastid	24.38	28.73
PGSC0003DMT400059062	Potato	cytosol	23.14	28.19
PGSC0003DMT400092428	Potato	cytosol, mitochondrion, nucleus	15.01	24.77
PGSC0003DMT400075923	Potato	cytosol	19.15	24.69
PGSC0003DMT400036570	Potato	cytosol	19.01	24.08
PGSC0003DMT400058608	Potato	mitochondrion	12.95	23.5
PGSC0003DMT400075705	Potato	mitochondrion	12.26	22.7
PGSC0003DMT400020390	Potato	cytosol	17.77	21.72
PGSC0003DMT400017184	Potato	cytosol	12.67	21.35
PGSC0003DMT400025029	Potato	nucleus	7.16	18.31

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	EntrezGene:102589236	MapMan:22.1.6.1	InterPro:ANTH_dom	InterPro:Clathrin_AP_dom2
InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005543
GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136	GO:GO:0030276	GO:GO:0048268
InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M1B398	PFAM:PF07651	EnsemblPlantsGene:PGSC0003DMG400013900
PGSC:PGSC0003DMG400013900	EnsemblPlants:PGSC0003DMT400036091	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273
SUPFAM:SSF48464	SUPFAM:SSF89009	UniParc:UPI000295E343	RefSeq:XP_006352043.1	SEG:seg	:

Description

Clathrin coat assembly protein AP180 [Source:PGSC_GENE;Acc:PGSC0003DMG400013900]

Coordinates

chr12:-:6390021..6392524

Molecular Weight (calculated)

80988.2 Da

IEP (calculated)

5.161

GRAVY (calculated)

-0.548

Length

726 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVSSNTSST LEVAVLKATT HDDVPIDDRY VQEVIKLVSS NKAYAAACAR AIGKRIGRTR NWIVALKSLM LVLRIFQDGD
101: PYFPREILHA MKRGAKILNL SSFRDDSNSS PWDFTAFVRT FALYLDERLD CFLTGKLQRR YNNRERENSS SHIYRSTGSS RRRGDEPVRD MKPVMLLDKI
201: SYWQRLIERA IATRPTGAAK TNRLVQIALY AVVTESFDLY KDISDGLALV LDSFFHLPYQ SCVNAFQTCV KAAKQFEEIS AFYSVCKTIG VGRTSEYPSV
301: QTISEELIET LQEFLKDQSS FPAHTQSKPH LLLPGTGGGS SRTTSSKRDS YGCQSDFSVT TGTTEPYSEK STNTCVDSRC TSLEDLISAT ETWKSPANIS
401: IDLEAYSDIQ FEKQLHEKDD SGSTHSLPVS NSMADLVSLP DLQEYDEDDE KKQEAELEQH QKQNPSLDST SSAKGWELVL TEAIPSTSFN AFPEQPKPDH
501: LSRNEMRGVI TPSASFNAFP EQGQENVPTN EAEVSSSNGW ELVLFENIPQ AQSTQPVVPS TTNNNNVNSF SFATLDDLYN QNQTPFYPNN SQNSHFTPST
601: NNFLYDQTPA PQHYNPFLQD TSMELAMVPV TGAPAPYPTL TTNSSFSFPT STDMFTSSAP TFQATPTFSA QNHTTGPMQS TNMDDPFATF SSSDQMFNGI
701: KNEQNLMQEQ QLWLQNQNKI IAKHRA

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.