Factsheet for Bra015381.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002427.1-P
Bra040613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05020.1	Bra040613.1-P	AT2G15270.1	21798944
AT1G05020.1	Bra002427.1-P	AT5G22780.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53396	Canola	cytosol	90.11	96.47
CDY18283	Canola	cytosol, nucleus, peroxisome	71.27	94.58
AT1G05020.1	Thale cress	cytosol	79.91	77.95
Bra030600.1-P	Field mustard	cytosol, golgi, nucleus	72.21	71.32
VIT_12s0059g01330.t01	Wine grape	cytosol	48.51	52.28
PGSC0003DMT400036091	Potato	cytosol	51.81	45.45
Solyc12g006000.1.1	Tomato	cytosol	51.81	45.33
Solyc07g049380.1.1	Tomato	cytosol	49.61	42.53
PGSC0003DMT400001773	Potato	nucleus	49.14	41.57
KRH17907	Soybean	cytosol	45.21	39.45
GSMUA_Achr2P18700_001	Banana	cytosol	30.93	39.32
GSMUA_Achr7P02300_001	Banana	plastid	28.89	36.44
Bra011333.1-P	Field mustard	cytosol	29.36	29.82
Bra007800.1-P	Field mustard	cytosol	28.41	29.53
Bra034252.1-P	Field mustard	cytosol	29.2	28.66
Bra030518.1-P	Field mustard	mitochondrion	25.27	27.29
Bra036250.1-P	Field mustard	mitochondrion	25.59	27.12
Bra032561.1-P	Field mustard	mitochondrion	24.49	26.13
Bra033369.1-P	Field mustard	cytosol	17.27	23.45
Bra024871.1-P	Field mustard	cytosol	20.72	23.12
Bra012491.1-P	Field mustard	mitochondrion	13.5	22.75
Bra024772.1-P	Field mustard	mitochondrion	13.34	22.55
Bra017439.1-P	Field mustard	cytosol	19.94	22.24
Bra038937.1-P	Field mustard	mitochondrion	19.15	22.18
Bra033960.1-P	Field mustard	mitochondrion	12.24	21.43
Bra026195.1-P	Field mustard	cytosol	11.77	21.07
Bra020460.1-P	Field mustard	cytosol	19.62	21.04
Bra002750.1-P	Field mustard	cytosol	19.31	20.74
Bra013934.1-P	Field mustard	cytosol	19.31	20.47
Bra028000.1-P	Field mustard	mitochondrion	11.62	19.95
Bra004282.1-P	Field mustard	mitochondrion	11.3	19.94
Bra026647.1-P	Field mustard	cytosol	20.57	18.19
Bra026179.1-P	Field mustard	cytosol, mitochondrion	18.84	15.67

Protein Annotations

Gene3D:1.20.58.150	Gene3D:1.25.40.90	MapMan:22.1.6.1	InterPro:ANTH_dom	EnsemblPlantsGene:Bra015381	EnsemblPlants:Bra015381.1
EnsemblPlants:Bra015381.1-P	InterPro:Clathrin_AP_dom2	InterPro:ENTH	InterPro:ENTH_VHS	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005543	GO:GO:0005545	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008289	GO:GO:0009987	GO:GO:0016043	GO:GO:0030136
GO:GO:0030276	GO:GO:0048268	InterPro:IPR008942	InterPro:IPR013809	InterPro:IPR014712	UniProt:M4DFV8
PFAM:PF07651	PFscan:PS50942	PANTHER:PTHR22951	PANTHER:PTHR22951:SF26	SMART:SM00273	SUPFAM:SSF48464
SUPFAM:SSF89009	UniParc:UPI0002543ADA	SEG:seg	:	:	:

Description

AT1G05020 (E=6e-147) | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related

Coordinates

chrA10:+:2178345..2180258

Molecular Weight (calculated)

70570.3 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.390

Length

637 amino acids

Sequence
(BLAST)

001: MPSKLKKAIG AVKDHTSISL AKVATGANGG GDLTTLEVAI LKTTSHDEDV PIYDRLVSDI LGIISSKKSH AAACAAAIGR RIGRTKNWIV ALKSLVLVLR
101: IFQDGDPYFP REILHAMKRG AKILNLSTFR DDSNSCPWDY TAFVRTFALY LDERLDCFLT GKLQRRYTNR DQTGRITTSK SRFSPKLNEP AVRDMKPVML
201: LDKITHWQRL LDRAIATRPT GDAKANKLVK MSLYAVAQES FDLYRDISDG LALLLDSFFH LQYQSCMHAF QACLRASKQF DELNGFYGLC KSIGVGRTSE
301: YPSVQKISLE LLETLREFLK DQSSFPPPPN SLPPQPQATV SSSPEALERY WDCGGSFRST SLEDLMSRTD AGTSSPPMSC QSEPYGGGRD DLNGNNFDTV
401: STKSLPNNPS VSAKEKKKEE DAKVEEAFDP WEALMLRDDP RKNVETIATS EDQRDSGNWL FALEETATQV QDTNPMAIVP SGNWLLALEE TATQVQDTNS
501: MAIVPFGLND PVPALQATTD QYNPFLEDTA TAPLAAESDF QPLAGELMTT FNALAVTEFQ PQPTFQVNFP EDFEPSSTPT FKAIGSLPEK CDPFATFESF
601: GFGETVSENG GVNQQSVLQE QQLWLQNQNK IMAKHLI

Best Arabidopsis Sequence Match ( AT1G05020.1 )
(BLAST)

001: MPSKLKKAIG AVKDQTSISL AKVANGATGG GDLTTLEVAI LKATSHDEEV PIDDRLVTEI LGIISSKKSH AASCAAAIGR RIGRTRNWIV ALKSLVLVLR
101: IFQDGDPYFP REVLHAMKRG AKILNLSSFR DDSNSCPWDF TAFVRTFALY LDERLDCFLT GKLQRRYTNR EQTGRISTNS TTRSRFNPKA GIKSHEPAVR
201: DMKPVMLLDK ITYWQKLLDR AIATRPTGDA KANRLVKMSL YAVMQESFDL YRDISDGLAL LLDSFFHLQY QSCINAFQAC VRASKQFEEL NAFYDLSKSI
301: GIGRTSEYPS IQKISLELLE TLQEFLKDQS SFPASSGLYP SPNSFLPPPP SSKDSAVSSS LDFGDSTIDT SERYSDYGSF RSTSLEDLMS RTEAGTSSPP
401: MSCHSEPYGG GRDDPNGNNF DTVSTKSLPN NPSVSASNLI LDLLSLDDVS NTAEAEDVED KKKQDDSKAE TFDPWEALML RDDPKKKIET IEEEPSTAED
501: HQRDSGNWLL ALEETATQVQ GNNSMAIVPF GLDDPMPAFQ AATDQYNPFL EEPVAQLATA GEPMITFGGL ALTGFQPEPT FQVNVPDDFE PSSTPTFKAT
601: ETLPMKCDPF TTFESFGFGE TFSENGGVNQ QSVLQEQQIW LQNQKKIIAK HLS

Arabidopsis Description

AP180Clathrin coat assembly protein AP180 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.