Factsheet for Bra002427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000163.1-P	plasma membrane
Bra001391.1-P	plasma membrane
Bra002727.1-P
Bra006819.1-P
Bra015381.1-P
Bra015600.1-P	golgi
Bra017039.1-P	plasma membrane
Bra019302.1-P
Bra022067.1-P
Bra030600.1-P
Bra034166.1-P	plasma membrane
Bra034864.1-P	plasma membrane
Bra037194.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Bra015600.1-P	AT1G47830.1	23975899
AT5G22770.1	Bra015600.1-P	AT1G47830.1	23975899
AT5G22770.1	Bra000163.1-P	AT2G40060.1	23975899
AT5G22770.1	Bra017039.1-P	AT2G40060.1	23975899
AT5G22770.1	Bra000163.1-P	AT2G40060.1	23975899
AT5G22770.1	Bra017039.1-P	AT2G40060.1	23975899
AT5G22770.1	Bra022067.1-P	AT3G01780.1	24529374
AT5G22770.1	Bra001391.1-P	AT3G11130.1	23975898
AT5G22770.1	Bra034166.1-P	AT3G11130.1	23975898
AT5G22770.1	Bra034864.1-P	AT3G11130.1	23975898
AT5G22770.1	Bra019302.1-P	AT4G23460.1	23975899
AT5G22770.1	Bra002727.1-P	AT5G57460.1	24529374
AT5G22770.1	Bra006819.1-P	AT5G57460.1	24529374
AT5G22770.1	Bra037194.1-P	AT5G65960.1	23975899
AT5G22780.1	Bra015381.1-P	AT1G05020.1	15054111
AT5G22780.1	Bra030600.1-P	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92339	Canola	cytosol	99.9	99.9
CDY26951	Canola	cytosol	99.7	99.6
AT5G22780.1	Thale cress	cytosol	95.03	94.47
AT5G22770.1	Thale cress	cytosol	94.84	94.37
Solyc11g066760.1.1	Tomato	cytosol	42.6	91.86
GSMUA_Achr5P15260_001	Banana	cytosol	11.52	88.55
Bra037603.1-P	Field mustard	cytosol	88.18	87.57
Os03t0112101-00	Rice	plasma membrane	33.66	86.92
VIT_06s0061g01170.t01	Wine grape	cytosol	83.12	82.46
KRH22743	Soybean	cytosol, endoplasmic reticulum	82.82	81.76
KRH26563	Soybean	endoplasmic reticulum	82.62	81.57
Solyc06g074650.2.1	Tomato	plastid	80.93	80.14
GSMUA_Achr1P01770_001	Banana	cytosol	77.36	76.0
KXG40365	Sorghum	cytosol	76.27	73.56
TraesCS4B01G395700.3	Wheat	cytosol, unclear	73.78	71.37
TraesCS5A01G557300.1	Wheat	cytosol	73.58	71.11
Zm00001d027333_P018	Maize	cytosol	75.17	70.88
Zm00001d048511_P008	Maize	cytosol	74.68	70.61
HORVU4Hr1G089310.1	Barley	cytosol	72.19	68.46
Solyc11g066770.1.1	Tomato	cytosol	29.49	68.43
GSMUA_Achr5P15250_001	Banana	cytosol	63.85	64.75
Os03t0112400-01	Rice	cytosol	9.83	64.71
Bra024627.1-P	Field mustard	mitochondrion	21.65	25.0
Bra012393.1-P	Field mustard	mitochondrion	21.45	24.71
Bra031528.1-P	Field mustard	mitochondrion	5.06	23.39
Bra024739.1-P	Field mustard	cytosol	5.56	21.29
Bra023199.1-P	Field mustard	cytosol	16.19	17.38
Bra022309.1-P	Field mustard	nucleus	14.2	16.71
Bra032266.1-P	Field mustard	nucleus	13.8	16.35

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	InterPro:AP2_complex_asu	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:Bra002427	EnsemblPlants:Bra002427.1	EnsemblPlants:Bra002427.1-P	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0006897	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0035615	GO:GO:0072583
InterPro:IPR011989	InterPro:IPR012295	UniProt:M4CDZ6	PFAM:PF01602	PFAM:PF02296	PFAM:PF02883
PIRSF:PIRSF037091	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0002544499	SEG:seg	:	:

Description

AT5G22780 (E=0.0) | adaptin family protein

Coordinates

chrA10:+:9629548..9637163

Molecular Weight (calculated)

111638.0 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.085

Length

1007 amino acids

Sequence
(BLAST)

0001: MTGMRGLSVF ISDIRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAINVD GWADRMTQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KSLFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVIHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDVIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFPMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH TQPRDPELEK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GAAFMDVLAE MPKFPERQSS
0601: LIKKAEVVED TADQSAIKLR AQQQPSNALV LADPQPVSGA PPPLKIPSEP QSVARSISQP NGTSSNTDPQ APSPDLLSDL LGPLAIEAPP GVVSTEQHGP
0701: TGTEGVPDEV DGSAIVPVGE QTNNVEVIGN IAERFHALCL KDSGVLYEDP YIQIGIKAEW RGHHGRLVLF LGNKSTNPLT SVQALILPPA HLKLELSPVP
0801: DTIPPRAQVQ SPLEVMNIRP SRDVAVLDFS YKLGTIVVGA KLRIPAVLNK FLQPLQLTSE EFFPQWRALS GPPLKLQEVV RGVRPLALPE MANLFNSFRV
0901: TICPGLDPNP NNLVASTTFY SETTGAMLCL ARIETDPADR TQLRMTVGSG DPTLTFELKE FIKEQLIAIP MGSRALVPAA APPPPVAQPP SPAALADDPG
1001: AMLAGLL

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.