Factsheet for GSMUA_Achr5P15260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
plasma membrane 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P24200_001
GSMUA_Achr2P11020_001
GSMUA_Achr2P18700_001
GSMUA_Achr3P27960_001
GSMUA_Achr4P29710_001
GSMUA_Achr6P17830_001
GSMUA_Achr7P02300_001
GSMUA_Achr8P19280_001	golgi
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr10P...	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr6P17830_001	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr1P24200_001	AT4G23460.1	23975899
AT5G22770.1	GSMUA_AchrUn_...	AT4G23460.1	23975899
AT5G22770.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374
AT5G22770.1	GSMUA_Achr2P11020_001	AT5G65960.1	23975899
AT5G22770.1	GSMUA_Achr4P29710_001	AT5G65960.1	23975899
AT5G22780.1	GSMUA_Achr2P18700_001	AT1G05020.1	15054111
AT5G22780.1	GSMUA_Achr7P02300_001	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20343	Canola	cytosol	86.26	36.22
Os03t0112101-00	Rice	plasma membrane	90.84	30.51
Solyc11g066760.1.1	Tomato	cytosol	59.54	16.7
GSMUA_Achr10P...	Banana	mitochondrion	33.59	13.06
VIT_06s0061g01170.t01	Wine grape	cytosol	92.37	11.92
GSMUA_Achr1P01770_001	Banana	cytosol	93.13	11.9
Solyc06g074650.2.1	Tomato	plastid	91.6	11.8
AT5G22770.1	Thale cress	cytosol	89.31	11.56
AT5G22780.1	Thale cress	cytosol	89.31	11.55
Bra002427.1-P	Field mustard	cytosol	88.55	11.52
CDX92339	Canola	cytosol	88.55	11.52
CDY29719	Canola	cytosol	86.26	11.52
CDY26951	Canola	cytosol	88.55	11.51
KXG40365	Sorghum	cytosol	91.6	11.49
TraesCS4B01G395700.3	Wheat	cytosol, unclear	90.84	11.43
TraesCS5A01G557300.1	Wheat	cytosol	90.84	11.42
Zm00001d048511_P008	Maize	cytosol	92.37	11.36
Zm00001d027333_P018	Maize	cytosol	91.6	11.24
HORVU4Hr1G089310.1	Barley	cytosol	90.84	11.21
Bra037603.1-P	Field mustard	cytosol	86.26	11.14
KRH25154	Soybean	cytosol	25.95	8.35
GSMUA_Achr9P18340_001	Banana	mitochondrion	34.35	5.21
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	32.82	4.98
GSMUA_Achr8P08830_001	Banana	cytosol	22.9	3.64
GSMUA_Achr11P...	Banana	cytosol	25.19	3.54
GSMUA_Achr4P06740_001	Banana	cytosol, plastid	14.5	2.66
GSMUA_Achr4P13750_001	Banana	nucleus, plastid	16.03	2.63
GSMUA_Achr5P15250_001	Banana	cytosol	3.82	0.5
Os03t0112400-01	Rice	cytosol	0.0	0.0
Solyc11g066770.1.1	Tomato	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
CDY20344	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
EnsemblPlantsGene:GSMUA_Achr5G15260_001	EnsemblPlants:GSMUA_Achr5P15260_001	EnsemblPlants:GSMUA_Achr5T15260_001	InterPro:IPR011989	UniProt:M0SYQ5	PFAM:PF01602
PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SUPFAM:SSF48371	UniParc:UPI0002955734	:	:

Description

AP-2 complex subunit alpha-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G15260_001]

Coordinates

chr5:-:11225862..11228330

Molecular Weight (calculated)

15360.9 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.261

Length

131 amino acids

Sequence
(BLAST)

001: MALTGMRGLS VFISDVRNCQ NKEQERLRVD KELGNIRTRF KNEKALTHYK KKKYVWKMLY IYMLGYDVDF GHMEAVSLIS APKYPEKQVG YIVTSCLLTE
101: NHEFLRMVIN TVRNDIIGRN ETFQCLALTM V

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.