Factsheet for GSMUA_Achr10P01910_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18340_001	Banana	mitochondrion	62.94	26.77
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	62.67	26.65
Os06t0167100-01	Rice	plasma membrane	58.58	24.71
TraesCS7B01G029800.2	Wheat	cytosol	58.31	24.6
HORVU7Hr1G027050.3	Barley	cytosol	57.77	24.4
TraesCS7D01G128900.2	Wheat	cytosol	57.77	24.37
TraesCS7A01G129800.3	Wheat	peroxisome	57.49	24.25
KXG19397	Sorghum	cytosol, plastid	56.4	23.68
Zm00001d045195_P002	Maize	cytosol	55.86	23.64
Solyc05g005780.2.1	Tomato	nucleus	55.59	23.21
VIT_01s0026g00310.t01	Wine grape	mitochondrion	55.31	23.12
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	54.77	22.87
KRH74623	Soybean	mitochondrion	54.22	22.85
Zm00001d036305_P003	Maize	mitochondrion	56.13	22.74
Solyc04g025870.2.1	Tomato	plastid	53.68	22.46
KRH69527	Soybean	mitochondrion	53.41	22.45
TraesCS6A01G373200.1	Wheat	mitochondrion	54.5	22.42
KXG31353	Sorghum	cytosol	55.04	22.42
TraesCS6D01G357400.1	Wheat	golgi	54.77	22.41
Zm00001d051998_P003	Maize	cytosol	54.77	22.31
CDY59088	Canola	mitochondrion	51.23	21.56
Bra024627.1-P	Field mustard	mitochondrion	51.23	21.56
TraesCS6B01G410900.2	Wheat	cytosol	52.59	21.54
CDY47649	Canola	mitochondrion	50.95	21.45
AT1G60070.2	Thale cress	cytosol, mitochondrion	52.32	21.38
Bra012393.1-P	Field mustard	mitochondrion	50.68	21.28
CDY28466	Canola	mitochondrion	50.68	21.28
CDY25807	Canola	mitochondrion	50.68	21.26
AT1G23900.2	Thale cress	mitochondrion	49.86	20.89
KRH45711	Soybean	cytosol, mitochondrion	48.23	20.09
HORVU6Hr1G087920.7	Barley	mitochondrion	54.22	19.84
CDY33619	Canola	mitochondrion	22.62	18.24
Bra031528.1-P	Field mustard	mitochondrion	5.99	10.09
GSMUA_Achr5P15250_001	Banana	cytosol	16.89	6.24
GSMUA_Achr1P01770_001	Banana	cytosol	16.89	6.05
GSMUA_Achr4P13750_001	Banana	nucleus, plastid	10.35	4.77
GSMUA_Achr11P...	Banana	cytosol	11.72	4.62
CDY24514	Canola	cytosol	2.45	4.46
GSMUA_Achr4P06740_001	Banana	cytosol, plastid	8.45	4.34
GSMUA_Achr8P08830_001	Banana	cytosol	8.72	3.88
CDX91727	Canola	mitochondrion	0.82	2.5
GSMUA_Achr10P...	Banana	mitochondrion	1.09	1.19
HORVU5Hr1G019420.1	Barley	cytosol	0.27	1.18
HORVU3Hr1G053020.1	Barley	cytosol	0.27	1.18
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	0.27	1.18
HORVU7Hr1G050510.16	Barley	cytosol	0.27	0.61
HORVU3Hr1G040310.1	Barley	cytosol	0.27	0.56
Os02t0805000-01	Rice	cytosol, plasma membrane	0.54	0.41
KRG99303	Soybean	nucleus	0.0	0.0
GSMUA_Achr5P15260_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:35.1	InterPro:ARM-like	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf
InterPro:GAE_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSMUA_Achr10G01910_001
EnsemblPlants:GSMUA_Achr10P01910_001	EnsemblPlants:GSMUA_Achr10T01910_001	InterPro:IPR000535	InterPro:IPR008153	InterPro:IPR011989	UniProt:M0REL8
InterPro:MSP_dom	PFAM:PF02883	PFscan:PS50180	PFscan:PS50202	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27
SMART:SM00809	SUPFAM:SSF49348	UniParc:UPI000295A2F9	SEG:seg	:	:

Description

AP-1 complex subunit gamma-2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G01910_001]

Coordinates

chr10:+:4469404..4485063

Molecular Weight (calculated)

39766.0 Da

IEP (calculated)

4.540

GRAVY (calculated)

-0.229

Length

367 amino acids

Sequence
(BLAST)

001: MCLQVTESDA VDVLEASLKN CSPDITTQSL SLIALLKLSS RFPPTSEQVP KLDRIIMYHK GSVVLELQQR AIEFNSIIQR HQNIKPSLLE RMPVLDEMTY
101: LLKKASSSQA NVSADKTSKS NSRASLKLPN GVIHAPATPD LDLLDLSSDD NPANTSSSND YLHDLLGIGL TNTGSTDQGI APSEGTDILM DLLSIGAPTV
201: QNDILVSDAV SSNQGIAPAT KPSSTTQVMD LLDGTPTNTS ISDYQNPVHP SIIAFQSNTL MITFTFTKQA DDPKVTQIQA TFTNLSSDTY TDFVFQAAVP
301: KFIQLQLDPA SSNFLPANSN EEITQSLTVT NTQHGQKALA MRMRIAYKVN NQDVLEQGQV NNFPPGL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.