CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plasma membrane 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69527	Soybean	mitochondrion	97.59	97.37
CDX91727	Canola	mitochondrion	11.6	84.17
KRH45711	Soybean	cytosol, mitochondrion	84.5	83.54
VIT_01s0026g00310.t01	Wine grape	mitochondrion	82.66	82.0
GSMUA_Achr10P...	Banana	mitochondrion	31.0	80.12
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	80.14	79.41
Solyc05g005780.2.1	Tomato	nucleus	80.02	79.29
Solyc04g025870.2.1	Tomato	plastid	78.53	77.99
CDY59088	Canola	mitochondrion	76.58	76.49
Bra024627.1-P	Field mustard	mitochondrion	76.46	76.38
CDY47649	Canola	mitochondrion	76.46	76.38
CDY25807	Canola	mitochondrion	76.69	76.34
Bra012393.1-P	Field mustard	mitochondrion	76.58	76.32
CDY28466	Canola	mitochondrion	76.58	76.32
AT1G60070.2	Thale cress	cytosol, mitochondrion	77.73	75.39
AT1G23900.2	Thale cress	mitochondrion	75.78	75.34
Os02t0805000-01	Rice	cytosol, plasma membrane	42.25	75.26
CDY24514	Canola	cytosol	16.76	72.28
HORVU5Hr1G019420.1	Barley	cytosol	7.0	71.76
GSMUA_Achr9P18340_001	Banana	mitochondrion	70.84	71.49
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	70.26	70.92
Os06t0167100-01	Rice	plasma membrane	70.26	70.34
HORVU7Hr1G027050.3	Barley	cytosol	70.15	70.31
Zm00001d045195_P002	Maize	cytosol	69.35	69.67
TraesCS7D01G128900.2	Wheat	cytosol	69.58	69.66
TraesCS7A01G129800.3	Wheat	peroxisome	69.46	69.54
HORVU3Hr1G053020.1	Barley	cytosol	6.77	69.41
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	6.77	69.41
TraesCS7B01G029800.2	Wheat	cytosol	69.23	69.31
KXG19397	Sorghum	cytosol, plastid	69.0	68.76
TraesCS6A01G373200.1	Wheat	mitochondrion	68.54	66.93
Zm00001d036305_P003	Maize	mitochondrion	69.12	66.45
TraesCS6D01G357400.1	Wheat	golgi	68.43	66.44
TraesCS6B01G410900.2	Wheat	cytosol	68.08	66.18
CDY33619	Canola	mitochondrion	34.56	66.15
KXG31353	Sorghum	cytosol	67.16	64.93
Zm00001d051998_P003	Maize	cytosol	66.93	64.71
HORVU6Hr1G087920.7	Barley	mitochondrion	68.89	59.82
HORVU3Hr1G040310.1	Barley	cytosol	12.28	59.78
HORVU7Hr1G050510.16	Barley	cytosol	11.14	59.15
Bra031528.1-P	Field mustard	mitochondrion	14.01	55.96
GSMUA_Achr10P...	Banana	cytosol	22.85	54.22
KRG99303	Soybean	nucleus	8.61	41.67
KRH26563	Soybean	endoplasmic reticulum	25.6	21.86
KRH22743	Soybean	cytosol, endoplasmic reticulum	25.49	21.76
KRH07246	Soybean	nucleus	21.58	19.16
KRH76456	Soybean	nucleus	21.24	19.15
KRH07767	Soybean	nucleus	21.24	18.86
KRH39774	Soybean	nucleus	21.58	18.29
KRH41691	Soybean	cytosol	16.88	16.05
KRH60392	Soybean	cytosol	17.11	15.25
KRH25154	Soybean	cytosol	6.31	13.51

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100802164	Gene3D:2.60.40.1230	MapMan:22.1.2.1	EMBL:ACUP02000052	InterPro:AP1_complex_gsu
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	ncoils:Coil
InterPro:GAE_dom	EnsemblPlantsGene:GLYMA_01G032100	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	UniProt:I1J5B0	InterPro:IPR008153	InterPro:IPR011989
EnsemblPlants:KRH74623	ProteinID:KRH74623	ProteinID:KRH74623.1	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094
PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
UniParc:UPI0001D65160	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3374233..3387279

Molecular Weight (calculated)

95350.1 Da

IEP (calculated)

6.628

GRAVY (calculated)

-0.037

Length

871 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECAAIRAA INENDNDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCSIRIIKK VPDLAENFIN PATSLLREKH HGVLITGVQL
201: CTDLCKISTE ALEHIRKKCT DGLVRTLKDL ANSPYSPEYD IAGITDPFLH IRLLKLLRVL GEGNADASDT MNDILAQVAT KTESNKVAGN AILYECVQTI
301: MSIEDNGGLR VLAINILGRF LSNRDNNIRY VALNMLMKAV TADAQAVQRH RATIIECVKD SDASIQKRAL ELVYVLVNET NVKPLAKELI DYLEVSDLDF
401: RGDLTAKICS IVAKYSPEKI WYIDQMLKVL SQAGNFVKDE VWYALIVVIT NASELHGYTV RALYRAFQMS AEQETLVRVT VWCIGEYGDM LVNNVGMLDI
501: EDPITVTEFD AVDVVEIAIK RHASDLTTKS MALVALLKLS SRFPSCSERI KEIIVQFKGS FVLELQQRAI EFNSIIAKHQ NIRSTLVERM PVLDEATSIG
601: RRAGSLPGAA STPTAPSFNL PNGTAKPVAP LVDLLDLSSD DAPAPSSSSG GDILQDLLGV DLSPASQQSV AGQASKSGND VLLDLLSIGS PSVESSSSTV
701: DILSSNSSNK APVSSLDGLS SLSLSTKTTS NAAPMMDLLD GFAPIPPTEN NGPVYPSVTA FESSSLRLTF NFSKQPGNPQ TTVIQATFMN LSSNTYTDFV
801: FQAAVPKFLQ LHLDPASSNT LPANGSITQS LKITNSQHGK KSLVMRIRIA YKINGKDTLE EGQVNNFPRG L

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.