CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74623	Soybean	mitochondrion	83.54	84.5
KRH69527	Soybean	mitochondrion	83.43	84.19
CDX91727	Canola	mitochondrion	11.35	83.33
VIT_01s0026g00310.t01	Wine grape	mitochondrion	79.34	79.61
GSMUA_Achr10P...	Banana	mitochondrion	29.28	76.56
HORVU5Hr1G019420.1	Barley	cytosol	7.38	76.47
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	75.94	76.11
Solyc05g005780.2.1	Tomato	nucleus	75.71	75.88
Solyc04g025870.2.1	Tomato	plastid	74.35	74.69
HORVU3Hr1G053020.1	Barley	cytosol	7.15	74.12
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.15	74.12
CDY59088	Canola	mitochondrion	73.1	73.85
CDY47649	Canola	mitochondrion	72.87	73.62
Bra024627.1-P	Field mustard	mitochondrion	72.87	73.62
Os02t0805000-01	Rice	cytosol, plasma membrane	40.86	73.62
CDY25807	Canola	mitochondrion	73.1	73.6
CDY28466	Canola	mitochondrion	72.99	73.57
AT1G23900.2	Thale cress	mitochondrion	72.87	73.29
Bra012393.1-P	Field mustard	mitochondrion	72.64	73.23
AT1G60070.2	Thale cress	cytosol, mitochondrion	74.57	73.16
CDY24514	Canola	cytosol	16.12	70.3
Os06t0167100-01	Rice	plasma membrane	67.2	68.05
HORVU7Hr1G027050.3	Barley	cytosol	67.08	68.01
TraesCS7A01G129800.3	Wheat	peroxisome	66.97	67.82
TraesCS7D01G128900.2	Wheat	cytosol	66.74	67.59
TraesCS7B01G029800.2	Wheat	cytosol	66.63	67.47
GSMUA_Achr9P18340_001	Banana	mitochondrion	66.06	67.44
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	66.06	67.44
Zm00001d045195_P002	Maize	cytosol	66.06	67.13
KXG19397	Sorghum	cytosol, plastid	65.72	66.25
TraesCS6A01G373200.1	Wheat	mitochondrion	66.29	65.47
TraesCS6D01G357400.1	Wheat	golgi	66.06	64.88
TraesCS6B01G410900.2	Wheat	cytosol	65.83	64.73
Zm00001d036305_P003	Maize	mitochondrion	66.06	64.24
CDY33619	Canola	mitochondrion	32.58	63.08
Zm00001d051998_P003	Maize	cytosol	64.36	62.93
KXG31353	Sorghum	cytosol	64.36	62.93
HORVU3Hr1G040310.1	Barley	cytosol	12.49	61.45
HORVU7Hr1G050510.16	Barley	cytosol	11.12	59.76
HORVU6Hr1G087920.7	Barley	mitochondrion	66.63	58.52
Bra031528.1-P	Field mustard	mitochondrion	13.73	55.5
GSMUA_Achr10P...	Banana	cytosol	20.09	48.23
KRG99303	Soybean	nucleus	8.74	42.78
KRH22743	Soybean	cytosol, endoplasmic reticulum	24.4	21.08
KRH26563	Soybean	endoplasmic reticulum	24.29	20.98
KRH07246	Soybean	nucleus	20.77	18.65
KRH07767	Soybean	nucleus	20.54	18.45
KRH76456	Soybean	nucleus	20.09	18.32
KRH39774	Soybean	nucleus	20.2	17.32
KRH41691	Soybean	cytosol	16.69	16.05
KRH60392	Soybean	cytosol	17.14	15.46
KRH25154	Soybean	cytosol	5.68	12.29

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100817075	Gene3D:2.60.40.1230	MapMan:22.1.2.1	EMBL:ACUP02005278	InterPro:AP1_complex_gsu
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom
EnsemblPlantsGene:GLYMA_08G289100	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030121
GO:GO:0030131	GO:GO:0031410	UniProt:I1KXI7	InterPro:IPR008153	InterPro:IPR011989	EnsemblPlants:KRH45711
ProteinID:KRH45711	ProteinID:KRH45711.1	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180
PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI00023386FC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:40180178..40198929

Molecular Weight (calculated)

96590.6 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.061

Length

881 amino acids

Sequence
(BLAST)

001: MNPFSSPARL RDMIRAIRAC KTAAEERAVV RKECAAIRAS IDENDPDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRMGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NISSAEMARD LAPEVERLLH FRDPNIRKKA ALCSARIIKK VPDLAENFVN PATALLREKH HGVLITGVQL
201: CTELCKISSE ALEHVRKKCT EGLVRTLKDL ANSPYSPEYD TAGFTDPFLH IRLLRLLRVL GEDHADASDS MNDILAQVAT KIESNKIIGN AILYECVQTI
301: MSVEDNGGLR VLAINILGRF LSHKDNNIRY VGLNMLMKAV TVDAQAVQRH RATILECLKD SDASIRKRAL ELVCILVNET NVKALTKELV EYLEVSDPDF
401: RADLTAKICS IVSKFSPEKI WYIDQMLKVL SEAGNFVKDE VWHALIVVIS NASELHGYTV RALYKAFKMS AEQETLVRVA VWCIGEYGDI LINNAGMLDV
501: EDPVTVSESD VVDVVEIALK CHASDLTTKA MALVALLKLS SRFPSCSERI REIIVQCKGN LVLELQQRSI EFNLIIAKHQ NIRPTLVERM PVLDEVTFIA
601: RRAGSFPGAG LTSTGSSVGL SNGVAKPVAP IVDLLDMNSD DAPAPSSSGG DFLQDLLGVD LSLASQQSDA SQPSRNGTDV LLDLLSIGSA SAPIESPAQS
701: NSSTIDILSP KQSKKAPISP LDDLSSLSLS SRATSNAGAA PMMDLLDGFA PGPPTEENNE LVYPSITAFE SSSLRLVFNF SKQPGNLQTT NIQASFTNLT
801: SNVYTEFTFQ AAVPKFLQLN LDPASGNTLP ASGKGSVTQN MKVTNSQHGK KSLVMRIKIA YKINGKETQE EGQINNFPRD L

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.