Factsheet for Solyc04g025870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
plasma membrane 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005780.2.1	Tomato	nucleus	83.81	83.62
CDX91727	Canola	mitochondrion	11.4	83.33
GSMUA_Achr10P...	Banana	mitochondrion	30.67	79.82
VIT_01s0026g00310.t01	Wine grape	mitochondrion	79.7	79.61
KRH74623	Soybean	mitochondrion	77.99	78.53
KRH69527	Soybean	mitochondrion	77.77	78.12
Os02t0805000-01	Rice	cytosol, plasma membrane	42.19	75.66
KRH45711	Soybean	cytosol, mitochondrion	74.69	74.35
HORVU5Hr1G019420.1	Barley	cytosol	7.18	74.12
CDY25807	Canola	mitochondrion	72.86	73.03
CDY28466	Canola	mitochondrion	72.75	73.0
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.07	72.94
HORVU3Hr1G053020.1	Barley	cytosol	7.07	72.94
CDY47649	Canola	mitochondrion	72.52	72.94
CDY59088	Canola	mitochondrion	72.52	72.94
Bra024627.1-P	Field mustard	mitochondrion	72.52	72.94
Bra012393.1-P	Field mustard	mitochondrion	72.63	72.88
AT1G23900.2	Thale cress	mitochondrion	72.75	72.83
AT1G60070.2	Thale cress	cytosol, mitochondrion	74.12	72.38
CDY24514	Canola	cytosol	16.42	71.29
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	68.99	70.1
HORVU7Hr1G027050.3	Barley	cytosol	68.64	69.28
Os06t0167100-01	Rice	plasma membrane	68.64	69.2
GSMUA_Achr9P18340_001	Banana	mitochondrion	68.07	69.18
TraesCS7D01G128900.2	Wheat	cytosol	68.19	68.74
TraesCS7B01G029800.2	Wheat	cytosol	68.19	68.74
TraesCS7A01G129800.3	Wheat	peroxisome	68.19	68.74
Zm00001d045195_P002	Maize	cytosol	67.39	68.17
KXG19397	Sorghum	cytosol, plastid	67.84	68.08
TraesCS6A01G373200.1	Wheat	mitochondrion	67.16	66.03
Zm00001d036305_P003	Maize	mitochondrion	67.84	65.67
TraesCS6D01G357400.1	Wheat	golgi	66.93	65.44
TraesCS6B01G410900.2	Wheat	cytosol	66.13	64.73
CDY33619	Canola	mitochondrion	33.3	64.18
KXG31353	Sorghum	cytosol	65.79	64.04
Zm00001d051998_P003	Maize	cytosol	65.68	63.93
HORVU3Hr1G040310.1	Barley	cytosol	12.77	62.57
HORVU7Hr1G050510.16	Barley	cytosol	11.17	59.76
HORVU6Hr1G087920.7	Barley	mitochondrion	67.16	58.72
Bra031528.1-P	Field mustard	mitochondrion	13.91	55.96
GSMUA_Achr10P...	Banana	cytosol	22.46	53.68
KRG99303	Soybean	nucleus	8.44	41.11
Solyc11g066760.1.1	Tomato	cytosol	16.31	30.62
Solyc06g074650.2.1	Tomato	plastid	26.0	22.42
Solyc08g075310.2.1	Tomato	cytosol	21.66	19.63
Solyc03g119270.1.1	Tomato	nucleus	17.79	16.08
Solyc11g066770.1.1	Tomato	cytosol	6.27	12.67

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	InterPro:IPR008153
InterPro:IPR011989	UniProt:K4BR30	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180
PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	EnsemblPlantsGene:Solyc04g025870.2
EnsemblPlants:Solyc04g025870.2.1	UniParc:UPI0002765C3E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:20774986..20816130

Molecular Weight (calculated)

96200.7 Da

IEP (calculated)

6.748

GRAVY (calculated)

-0.139

Length

877 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERGVV RKECAAIRAS ISENDPDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSI KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEIERLLQ FRDPNIRKKA ALCSIRIIKK VPDLAENFVN PVAALLKEKH HGVLITGVQL
201: CADLCKVSAE ALEYFRKTCT DGLVKVLKDV ANSPYAPEYD ISGISDPFLH IRLLKVLRVL GQGDADASDS MNDILAQVAT KTESNKNAGN AILYECVETI
301: MNIEDNGGLR VLAINILGRF LSNRDNNIRY VALNMLMRAI AVDSKAVQRH RATILECVKD SDPSIRKRAL DLVCLLVNET NVKPLTKELT EHLEVSDPEF
401: KGDLTAKICS IVEKFSHEKI WYIDQMLKVL SEAGNYVKDE VWHALIVVIT NASDLHGYAV RSLYRAVQKA RDQETLFRVA VWCIGEYGEM LVNNFGRLDI
501: EEPTTVTESD AVDVLETSIK IHSCDLTSQA MCLIALLKLS SRFPACSQRI NNIIGQYKGS FVLELQQRAT EFNSIIERHQ NMRSSLAERM PVLDEATFSG
601: RRAGSVPAAV STSQGVSVNL PNGSAKLSTA HVADLLDLSL DDAPAPSSSG GEFLQDLLGV NLMPVSLQPD ANQAQKRGSD VLLDLLSIGT PPAQSSPSTP
701: QVLSSNTDNR SPLDILDRLS TPSAPSAQVS STGGNSSMLD LLNGLPSSPP TSEGNGPAHS SVTAFESSSL RLTFNISKQP GNPQMTLIDG SFTNKSQDVF
801: TDFIFQAAVP KFLQLQLDPA SGNSLPANGN GSITQKLRIT NSQHGKKSLV MRIRISYKVN NKDVLEEGQV SNFPRDL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.