CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25807	Canola	mitochondrion	98.97	98.86
Bra012393.1-P	Field mustard	mitochondrion	98.51	98.51
CDY59088	Canola	mitochondrion	95.88	96.1
CDY47649	Canola	mitochondrion	95.08	95.3
AT1G23900.2	Thale cress	mitochondrion	91.42	91.21
CDX91727	Canola	mitochondrion	12.47	90.83
KRH74623	Soybean	mitochondrion	76.32	76.58
GSMUA_Achr10P...	Banana	mitochondrion	29.52	76.56
VIT_01s0026g00310.t01	Wine grape	mitochondrion	76.89	76.54
HORVU5Hr1G019420.1	Barley	cytosol	7.44	76.47
KRH69527	Soybean	mitochondrion	76.32	76.4
Os02t0805000-01	Rice	cytosol, plasma membrane	42.33	75.66
HORVU3Hr1G053020.1	Barley	cytosol	7.32	75.29
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.32	75.29
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	73.8	73.38
KRH45711	Soybean	cytosol, mitochondrion	73.57	72.99
Solyc04g025870.2.1	Tomato	plastid	73.0	72.75
Solyc05g005780.2.1	Tomato	nucleus	73.11	72.7
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	68.08	68.95
Os06t0167100-01	Rice	plasma membrane	68.54	68.85
GSMUA_Achr9P18340_001	Banana	mitochondrion	67.96	68.83
HORVU7Hr1G027050.3	Barley	cytosol	67.96	68.35
Zm00001d045195_P002	Maize	cytosol	67.62	68.17
KXG19397	Sorghum	cytosol, plastid	67.85	67.85
CDY24514	Canola	cytosol	15.68	67.82
TraesCS7B01G029800.2	Wheat	cytosol	67.51	67.82
TraesCS7D01G128900.2	Wheat	cytosol	67.28	67.59
TraesCS7A01G129800.3	Wheat	peroxisome	67.05	67.36
TraesCS6A01G373200.1	Wheat	mitochondrion	67.05	65.7
Zm00001d036305_P003	Maize	mitochondrion	67.85	65.45
CDY33619	Canola	mitochondrion	33.87	65.05
TraesCS6D01G357400.1	Wheat	golgi	66.7	64.99
TraesCS6B01G410900.2	Wheat	cytosol	66.25	64.62
Zm00001d051998_P003	Maize	cytosol	65.79	63.82
HORVU3Hr1G040310.1	Barley	cytosol	13.04	63.69
KXG31353	Sorghum	cytosol	65.56	63.6
HORVU7Hr1G050510.16	Barley	cytosol	11.44	60.98
HORVU6Hr1G087920.7	Barley	mitochondrion	67.28	58.62
GSMUA_Achr10P...	Banana	cytosol	21.28	50.68
KRG99303	Soybean	nucleus	8.12	39.44
CDY20343	Canola	cytosol	11.44	32.05
CDY70074	Canola	cytosol	17.62	24.37
CDX92339	Canola	cytosol	24.6	21.35
CDY26951	Canola	cytosol	24.6	21.33
CDY29719	Canola	cytosol	22.54	20.08
CDY42099	Canola	cytosol	20.82	19.28
CDX84997	Canola	cytosol	19.11	19.2
CDY04318	Canola	cytosol, nucleus, plastid	16.36	17.81
CDY24454	Canola	cytosol	16.82	17.21
CDY68338	Canola	nucleus	16.7	17.18
CDX92225	Canola	cytosol, nucleus, plastid	16.36	16.71
CDY20344	Canola	cytosol	11.9	16.12

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	GO:A0A078GSF5	UniProt:A0A078GSF5	InterPro:AP1_complex_gsu
InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlants:CDY28466	ProteinID:CDY28466	ProteinID:CDY28466.1	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	EnsemblPlantsGene:GSBRNA2T00040355001	InterPro:IPR008153
InterPro:IPR011989	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780
PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI0004EDF25E	SEG:seg

Description

BnaC07g12940DBnaC07g12940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSF5]

Coordinates

chrLK032220:-:420581..426690

Molecular Weight (calculated)

95853.5 Da

IEP (calculated)

5.889

GRAVY (calculated)

-0.063

Length

874 amino acids

Sequence
(BLAST)

001: MNPFSSSTRL RDMIRSIRAC KTAAEERGVV RKECADIRAS INENDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIVRK VPDLAENFIN AASSLLKEKH HGVLITGVQL
201: CYELCTINDE ALEFFRKKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLKVLRVL GHGDANASDL MTDILAQVAT KTESNKNAGN AILYECVETI
301: MAIEDTSSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI AFDDQAVQRH RVTILECVKD PDASIRKRAL ELVSLLVNEN NVKQLTKELI DYLEISDEDF
401: KEDLSAKICS IVEKFSPEKI WYIDQMLKVL SEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKAVLTY SEQETLVRVA IWCIGEYGDL LVNNVGMLGI
501: EDPITVTECD AVDVVEDAIT RHNSDMTTKA MALVALLKLS SRFPSISERI KDVILKQKGS LLLEMQQRAI EFNSIVERHK NIRSSLVERM PVLDEATFNV
601: RRAGSLPASV STMAKPSVSI PNGVSAAPLV DLLDLGSDDI LAAPSSSSGA DFLQDLLSVD LGSSSAQSGA TPAPKAGTDL LLDILSIGTP SPAQNSTSAI
701: DLLSTADMNN NSSTALDALS SSAPPHIATT ASAGGMFDLL DGLSPSPSKE ATNGPAYPPI VAYESSSLKI EFTFSKPSGN PQTTNVEATF INLSPDTFTD
801: FVFQAAVPKF LQLHLDPASS NTLPASGGKV TQNLRVTNSQ HGKKSLVMRM RIGYKVNGKD VLEEGQINNF PRGL

Best Arabidopsis Sequence Match ( AT1G23900.1 )
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECADIRAL INEDDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHSNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIIRK VPDLAENFVN AAASLLKEKH HGVLITGVQL
201: CYELCTINDE ALEYFRTKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLRLLRVL GQGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTNSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TFDDQAVQRH RVTILECVKD PDASIRKRAL ELVTLLVNEN NVTQLTKELI DYLEISDEDF
401: KEDLSAKICF IVEKFSPEKL WYIDQMLKVL CEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKSVLTY SEQETLVRVA VWCIGEYGDL LVNNVGMLGI
501: EDPITVTESD AVDVIEDAIT RHNSDSTTKA MALVALLKLS SRFPSISERI KDIIVKQKGS LLLEMQQRAI EYNSIVDRHK NIRSSLVDRM PVLDEATFNV
601: RRAGSFPASV STMAKPSVSL QNGVEKLPVA PLVDLLDLDS DDIMAAPSPS GTDFLQDLLG VDLGSSSAQY GATQAPKAGT DLLLDILSIG TPSPAQNSTS
701: SIGLLSIADV NNNPSIALDT LSSPAPPHVA TTSSTGMFDL LDGLSPSPSK EATNGPAYAP IVAYESSSLK IEFTFSKTPG NLQTTNVQAT FTNLSPNTFT
801: DFIFQAAVPK FLQLHLDPAS SNTLLASGSG AITQNLRVTN SQQGKKSLVM RMRIGYKLNG KDVLEEGQVS NFPRGL

Arabidopsis Description

GAMMA-ADRAP-1 complex subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84K16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.