CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025314_P001	Maize	cytosol	19.78	77.64
CDX84997	Canola	cytosol	94.46	68.62
Bra023199.1-P	Field mustard	cytosol	98.1	66.1
AT1G31730.1	Thale cress	cytosol	95.73	64.5
CDY42099	Canola	cytosol	94.78	63.45
GSMUA_Achr8P08830_001	Banana	cytosol	81.17	62.26
VIT_02s0087g00690.t01	Wine grape	nucleus	83.07	54.57
KRH07767	Soybean	nucleus	84.65	54.54
GSMUA_Achr11P...	Banana	cytosol	79.27	53.81
KRH07246	Soybean	nucleus	83.39	53.72
Solyc08g075310.2.1	Tomato	cytosol	81.96	53.51
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	79.59	52.78
TraesCS3D01G417200.1	Wheat	cytosol	79.43	52.68
KRH76456	Soybean	nucleus	80.38	52.59
EES04102	Sorghum	cytosol	80.06	52.22
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	79.27	52.02
Zm00001d012061_P005	Maize	cytosol	78.32	50.77
Os01t0916200-02	Rice	plasma membrane	65.98	49.52
Zm00001d042370_P003	Maize	cytosol	75.79	49.33
TraesCS3A01G421500.1	Wheat	golgi	79.75	48.74
KRH39774	Soybean	nucleus	79.11	48.64
CDX91727	Canola	mitochondrion	4.75	25.0
CDY20343	Canola	cytosol	12.03	24.36
CDY24514	Canola	cytosol	7.75	24.26
CDY47649	Canola	mitochondrion	24.37	17.66
CDY59088	Canola	mitochondrion	24.37	17.66
CDY28466	Canola	mitochondrion	24.37	17.62
CDY25807	Canola	mitochondrion	24.05	17.37
CDY33619	Canola	mitochondrion	12.5	17.36
CDY24454	Canola	cytosol	20.57	15.22
CDX92225	Canola	cytosol, nucleus, plastid	20.41	15.07
CDY04318	Canola	cytosol, nucleus, plastid	18.99	14.94
CDY68338	Canola	nucleus	18.83	14.0
CDX92339	Canola	cytosol	21.2	13.31
CDY26951	Canola	cytosol	21.2	13.29
CDY29719	Canola	cytosol	20.25	13.05
PGSC0003DMT400004931	Potato	nucleus	6.96	10.58
CDY20344	Canola	cytosol	7.75	7.6

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.1	GO:A0A078JTA3	UniProt:A0A078JTA3	InterPro:AP4_complex_esu	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY70074	ProteinID:CDY70074	ProteinID:CDY70074.1	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030124	EnsemblPlantsGene:GSBRNA2T00096268001	InterPro:IPR011989	PFAM:PF01602	PIRSF:PIRSF037097	PANTHER:PTHR22780
PANTHER:PTHR22780:SF13	SUPFAM:SSF48371	UniParc:UPI0004EEA8B9	SEG:seg	:	:

Description

BnaAnng32520DBnaAnng32520D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTA3]

Coordinates

chrLK041082:-:1..3198

Molecular Weight (calculated)

70935.1 Da

IEP (calculated)

5.519

GRAVY (calculated)

-0.009

Length

632 amino acids

Sequence
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEID ILKRKLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIHA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVDLLNHHK EAVRKKAIMA LHRFHRKSPS SVSHLISNFR
201: KRLCDNDPGV MGATLCPLFD LITEDVASYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKSA SEIMYMVLGD LFRKCDSSTN
301: IGNAILYECI RSISCIIPSP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQIM SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ESILPLDASC EDIEVTFSLH AFPCNVNFLN LT

Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG

Arabidopsis Description

AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.