Factsheet for VIT_02s0087g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70074	Canola	cytosol	54.57	83.07
Bra024739.1-P	Field mustard	cytosol	22.45	82.13
Solyc08g075310.2.1	Tomato	cytosol	75.26	74.79
KRH07767	Soybean	nucleus	76.09	74.62
GSMUA_Achr8P08830_001	Banana	cytosol	63.83	74.51
KRH07246	Soybean	nucleus	75.26	73.8
KRH76456	Soybean	nucleus	73.91	73.6
AT1G31730.1	Thale cress	cytosol	71.1	72.92
Bra023199.1-P	Field mustard	cytosol	70.27	72.07
CDY42099	Canola	cytosol	69.54	70.87
Zm00001d025314_P001	Maize	cytosol	11.75	70.19
GSMUA_Achr11P...	Banana	cytosol	67.15	69.39
CDX84997	Canola	cytosol	62.27	68.85
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	68.09	68.73
KRH39774	Soybean	nucleus	73.39	68.68
Os01t0916200-02	Rice	plasma membrane	59.98	68.53
EES04102	Sorghum	cytosol	68.92	68.42
TraesCS3D01G417200.1	Wheat	cytosol	67.67	68.31
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	67.26	67.19
Zm00001d012061_P005	Maize	cytosol	67.15	66.26
Zm00001d042370_P003	Maize	cytosol	65.9	65.29
TraesCS3A01G421500.1	Wheat	golgi	67.88	63.15
PGSC0003DMT400004931	Potato	nucleus	25.57	59.13
VIT_01s0026g00310.t01	Wine grape	mitochondrion	18.82	20.61
VIT_06s0061g01170.t01	Wine grape	cytosol	17.46	16.55
VIT_17s0000g03430.t01	Wine grape	cytosol	14.86	14.91

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100249377	wikigene:100249377	MapMan:22.5.2.2.1	InterPro:AP4_complex_esu	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB52221	ProteinID:CCB52221.1	InterPro:Clathrin/coatomer_adapt-like_N	UniProt:F6HJ24	EMBL:FN595769
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030124	InterPro:IPR011989	EntrezGene:LOC100249377	wikigene:LOC100249377
PFAM:PF01602	PIRSF:PIRSF037097	PANTHER:PTHR22780	PANTHER:PTHR22780:SF13	SUPFAM:SSF48371	TIGR:TC66957
TIGR:TC68910	UniParc:UPI0002109629	ArrayExpress:VIT_02s0087g00690	EnsemblPlantsGene:VIT_02s0087g00690	EnsemblPlants:VIT_02s0087g00690.t01	RefSeq:XP_002269504
RefSeq:XP_002269504.2	RefSeq:XP_010644481.1	SEG:seg	:	:	:

Description

AP-4 complex subunit epsilon [Source:UniProtKB/TrEMBL;Acc:F6HJ24]

Coordinates

chr2:+:18191313..18218553

Molecular Weight (calculated)

105516.0 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.241

Length

962 amino acids

Sequence
(BLAST)

001: MGSQGGFGNS KEFLDLVKSI GEARSKAEED RIVLHEIETL KRRIVEPDIP KRKMKEFIIR LVYVEMLGHD ASFGYIHAVK MTHDDSLLLK RTGYLAVTLF
101: LNEDHDLIIL IVNTIQKDLK SDNYLVVCAA LNAVCKLINE ETIPAVLPQV VELLGHSKEA VRKKAIMALH RFYQRSPSSV THLVSNFRKK LCDNDPGVMG
201: ATLCPLFDLI AVDANSYKDL VISFVSILKQ VAERRLPKTY DYHQMPAPFI QIRLLKILAL LGSGDRQASE NMYTVVGDIF RKCDSTSNIG NAVLYECICC
301: VSSIYPNPKL LEAAADVISR FLKSDSHNLK YMGIDALSRL IKISPEIAEQ HQLAVIDCLE DPDDTLKRKT FELLYRMTKS SNVEVIVDRM IDYMISINDN
401: HYKTEIASRC VELAEQFAPS NHWFIQTMNK VFEHAGDLVN IKVADNLMRL IAEGFGEDDD TADCQLRSSA VESYLRIIGE PKLPSAFLQV ICWVLGEYGT
501: AGGKYSASYI TGKLCDVAEA HSSNDTVKAY AVTALMKVYA FEIAAGRKVD MLPECQSLIE ELSASHSTDL QQRAYELQAV VTLDAHAVEI IMPSDASCED
601: IEVDKNLSFL DSYVERSLEQ GAQPYIPENE RSGMINISNF RSQDQHDTST HTLRFEAYEL PKTSAPPRIS PVSLAPSTEL VPVPEPSYPV EMHHVASVPS
701: VSDTGSTELR LRLDGVQKKW GRPTYSSPAS SSSDSTSHKA VNGVTQSDVS STSTSRTRDS SYDSRSAQAE ISSEKKKLAA SLFGGPSKTE KRPSSTSHKV
801: ARSTSPAVEK SQGPKAVASS TTGVVSEKAA PLQQPPDLLD LGEPTVTSSA SSVDPFKQLE GLLDPTQATS AANHGAVDNT KAADIMSMYS EFPPSGQSSV
901: IANPFTTNAG DANLIPGLST TNKTGHAKGP NPRDALEKDA LVRQMGVTPM SQNPNLFKDL LG

Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG

Arabidopsis Description

AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.