Factsheet for VIT_06s0061g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g00100.t01
VIT_03s0017g00210.t01	plasma membrane
VIT_04s0023g03340.t01	golgi
VIT_07s0031g02260.t01
VIT_11s0052g00920.t01
VIT_12s0059g01330.t01
VIT_13s0067g00550.t01	plasma membrane
VIT_14s0171g00280.t01
VIT_16s0115g00130.t01	plasma membrane
VIT_18s0001g14240.t01	golgi
VIT_19s0027g01340.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	VIT_04s0023g03340.t01	AT1G47830.1	23975899
AT5G22770.1	VIT_18s0001g14240.t01	AT1G47830.1	23975899
AT5G22770.1	VIT_04s0023g03340.t01	AT1G47830.1	23975899
AT5G22770.1	VIT_18s0001g14240.t01	AT1G47830.1	23975899
AT5G22770.1	VIT_13s0067g00550.t01	AT2G40060.1	23975899
AT5G22770.1	VIT_13s0067g00550.t01	AT2G40060.1	23975899
AT5G22770.1	VIT_14s0171g00280.t01	AT3G01780.1	24529374
AT5G22770.1	VIT_03s0017g00210.t01	AT3G11130.1	23975898
AT5G22770.1	VIT_16s0115g00130.t01	AT3G11130.1	23975898
AT5G22770.1	VIT_19s0027g01340.t01	AT3G11130.1	23975898
AT5G22770.1	VIT_02s0025g00100.t01	AT4G23460.1	23975899
AT5G22770.1	VIT_11s0052g00920.t01	AT5G57460.1	24529374
AT5G22770.1	VIT_07s0031g02260.t01	AT5G65960.1	23975899
AT5G22780.1	VIT_12s0059g01330.t01	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g066760.1.1	Tomato	cytosol	42.96	93.36
Os03t0112101-00	Rice	plasma membrane	35.57	92.56
GSMUA_Achr5P15260_001	Banana	cytosol	11.92	92.37
CDY20343	Canola	cytosol	28.18	91.67
KRH22743	Soybean	cytosol, endoplasmic reticulum	89.16	88.73
KRH26563	Soybean	endoplasmic reticulum	88.47	88.04
Solyc06g074650.2.1	Tomato	plastid	87.68	87.51
GSMUA_Achr1P01770_001	Banana	cytosol	85.32	84.49
CDY26951	Canola	cytosol	82.56	83.13
Bra002427.1-P	Field mustard	cytosol	82.46	83.12
CDX92339	Canola	cytosol	82.46	83.12
AT5G22770.1	Thale cress	cytosol	81.97	82.21
AT5G22780.1	Thale cress	cytosol	81.87	82.03
Bra037603.1-P	Field mustard	cytosol	81.87	81.95
KXG40365	Sorghum	cytosol	80.59	78.35
CDY29719	Canola	cytosol	75.17	77.78
Solyc11g066770.1.1	Tomato	cytosol	33.2	77.65
Zm00001d027333_P018	Maize	cytosol	80.0	76.03
Zm00001d048511_P008	Maize	cytosol	79.61	75.87
TraesCS4B01G395700.3	Wheat	cytosol, unclear	77.73	75.79
TraesCS5A01G557300.1	Wheat	cytosol	77.44	75.43
CDY20344	Canola	cytosol	47.68	75.04
HORVU4Hr1G089310.1	Barley	cytosol	76.06	72.69
GSMUA_Achr5P15250_001	Banana	cytosol	70.64	72.21
Os03t0112400-01	Rice	cytosol	9.26	61.44
VIT_01s0026g00310.t01	Wine grape	mitochondrion	21.28	24.6
VIT_02s0087g00690.t01	Wine grape	nucleus	16.55	17.46
VIT_17s0000g03430.t01	Wine grape	cytosol	14.19	15.02

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100241344	wikigene:100241344	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10
InterPro:AP2_complex_asu	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CBI17095	ProteinID:CBI17095.3	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C	UniProt:D7SN66	EMBL:FN594957
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	InterPro:IPR011989	InterPro:IPR012295	EntrezGene:LOC100241344
wikigene:LOC100241344	PFAM:PF01602	PFAM:PF02296	PFAM:PF02883	PIRSF:PIRSF037091	PANTHER:PTHR22780
PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
TIGR:TC51990	TIGR:TC66133	TIGR:TC67550	UniParc:UPI00015C99F1	ArrayExpress:VIT_06s0061g01170	EnsemblPlantsGene:VIT_06s0061g01170
EnsemblPlants:VIT_06s0061g01170.t01	unigene:Vvi.735	RefSeq:XP_002270388	RefSeq:XP_002270388.1	SEG:seg	:

Description

AP-2 complex subunit alpha [Source:UniProtKB/TrEMBL;Acc:D7SN66]

Coordinates

chr6:+:18876809..18913554

Molecular Weight (calculated)

113118.0 Da

IEP (calculated)

6.008

GRAVY (calculated)

-0.104

Length

1015 amino acids

Sequence
(BLAST)

0001: MALSGMRGLS VFISDIRNCQ NKEQERLRVD KELGNVRTRF KNEKGLTPYE KKKYVWKMLY IYMLGYDVDF GHMEAVSLIS APKYPEKQVG YIVTSCLLNE
0101: NHDFLRLAIN TVRNDIIGRN ETFQCLALTM VGNIGGREFA ESLAPDVQKL LISSSCRPLV RKKAALCLLR LYRKNPDVVN VDGWSDRMAQ LLDERDLGVL
0201: TSSMSLLVAL VSNNHDAYWS CLPKCVKILE RLARNQDVPQ EYTYYGIPTP WLQVKTMRAL QYFPTIEDPN TRRSLFEVLQ RILMGTDVVK NVNKNNASHA
0301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMTRMLM VSDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDI SNAKDIVEEL
0401: LQYLSSADFA MREELSLKAA ILAEKFAPDL SWYVDVILQL IDKAGDFVSD DIWFRVVQFV TNNEDLQPYA AAKAREYLDK PAIHETMVKV SAYLLGEYSH
0501: LLARRPGCSP KEIFGIIHEK LPTVSTSTVP ILLSTYAKIL MHTQPSDPEL QNQIWAIFSK YESCIDVEIQ QRAVEYFALS RKGAALMDIL AEMPKFPERQ
0601: SSLLKKAEDA EVDTAEQSAI KLRAQQQTSN ALVVTDQRPA NGTPYVGQLG LVMVPSSANA DHNLENQGPA QENGTLSQVD PQSPSPSADL LGDLLGPLAI
0701: EGPPGAAAPT EHVIPASEGD PNPADALALA PVDEQTNSVQ PIGNIAERFH ALCLKDSGVL YEDPYIQIGI KAEWRAHHGR LVLFLGNKNT SSLASVQALI
0801: LPPSHLKMEL SLVPETIPPR AQVQCPLEVM NLRPSRDVAV LDFSYKFGTS SVNVKLRLPA VLNKFLHPIS VTAEEFFPQW RSLSGPPLKL QEVVRGVRPM
0901: LLLEMANLFN SLRLMVCPGL DPNANNLVAS TTFYSESTRA MLCLMRIETD PADRTQLRMT VSSGDPTLTF ELKEFIKEQL VSIPTATRPP APEVAQPTSA
1001: VTSLTDPGAM LAGLL

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.